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The map label for this gene is ykgA [C]

Identifier: 29348467

GI number: 29348467

Start: 3879903

End: 3880745

Strand: Reverse

Name: ykgA [C]

Synonym: BT_3058

Alternate gene names: 29348467

Gene position: 3880745-3879903 (Counterclockwise)

Preceding gene: 29348468

Following gene: 29348466

Centisome position: 61.99

GC content: 39.86

Gene sequence:

>843_bases
ATGTCATCTATCTGTCAAGGTACTTGGGATTGTCAGAACTGCCCGAAAGCCGTAGACAATGCTATTGCTCACATTATTCA
TCCAAGAGGCTATCACCAACCAGCCCGGAAATGTGAGGAAAACTTCATCCTTTTTTTGATAAGAGGTGAGGTATTGGTTA
ATAGTCAAGAATATGCAGGTACGATGCTGAGAGCAGGTGAATTTATTCTTCAGGCTATCGGTTCAAAATTTGAGATGCTT
GCCATGACTGAGTGCGAATGTATTTATTATCGTTTCATTCAGCCGGAACTATTCTGTGACTTCCGTTTCAATCATATTAT
GAAGGAGGTGTCTTCACCATTAATCTATTCACCATTAAAGATAATCCCTGAATTGAAATATTTTTTGGATGGCTCTAAAT
CCTATTTGAGTGAAAGTAAAGTTTGTCGGGACTTGCTGTCGTTAAAGCGCAAGGAACTGGCATTTGTATTGGGGTACTAT
TATTCAGACTATGATTTGGCAAGCTTGGTACATCCACTCTCTAAATACACTTCCACTTTCCAGTACTTCATCCTTCAAAA
CTATAAGAAAGTAAAAACAGTGGAAGAACTTGCCCAACTTGGCGGCTATACTGTCAGTACCCTGCGGCGTATCTTCAATA
ATGTATTCCACGAACCGGTATACGAATGGATGCAGGCGCGACGTAAGGAAGGTATTTTGGACGAGTTGCTTAATACAAAC
AACAGTATCTCTGAAATATGCTATAAATATGGCTTTGAATCTCTGCCACACTTCTCCAATTTCTGTAAGAAATTCTTCGG
TGCTTCTCCACGCATGCTAAGAACAAACAAAAAGACCATCTGA

Upstream 100 bases:

>100_bases
AGAGTGATTTTATAAATTTCTTCCCTTTCTCATTGTCATATAAAAGATTTCATATACATTTGTTGGCCAACAGGAACAAA
TCAAACACCAACACAAATAT

Downstream 100 bases:

>100_bases
TAATTTTTCAGAGAGAACGTCAAATAATCTTTTTTTCTTTGTGAGCATAGTGCATTTGTTGTATATTGCTGCTGTTTCCC
TTAAAATCAGTCTAATACAT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcription Regulator; Transcriptional Regulator AraC Family

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSSICQGTWDCQNCPKAVDNAIAHIIHPRGYHQPARKCEENFILFLIRGEVLVNSQEYAGTMLRAGEFILQAIGSKFEML
AMTECECIYYRFIQPELFCDFRFNHIMKEVSSPLIYSPLKIIPELKYFLDGSKSYLSESKVCRDLLSLKRKELAFVLGYY
YSDYDLASLVHPLSKYTSTFQYFILQNYKKVKTVEELAQLGGYTVSTLRRIFNNVFHEPVYEWMQARRKEGILDELLNTN
NSISEICYKYGFESLPHFSNFCKKFFGASPRMLRTNKKTI

Sequences:

>Translated_280_residues
MSSICQGTWDCQNCPKAVDNAIAHIIHPRGYHQPARKCEENFILFLIRGEVLVNSQEYAGTMLRAGEFILQAIGSKFEML
AMTECECIYYRFIQPELFCDFRFNHIMKEVSSPLIYSPLKIIPELKYFLDGSKSYLSESKVCRDLLSLKRKELAFVLGYY
YSDYDLASLVHPLSKYTSTFQYFILQNYKKVKTVEELAQLGGYTVSTLRRIFNNVFHEPVYEWMQARRKEGILDELLNTN
NSISEICYKYGFESLPHFSNFCKKFFGASPRMLRTNKKTI
>Mature_279_residues
SSICQGTWDCQNCPKAVDNAIAHIIHPRGYHQPARKCEENFILFLIRGEVLVNSQEYAGTMLRAGEFILQAIGSKFEMLA
MTECECIYYRFIQPELFCDFRFNHIMKEVSSPLIYSPLKIIPELKYFLDGSKSYLSESKVCRDLLSLKRKELAFVLGYYY
SDYDLASLVHPLSKYTSTFQYFILQNYKKVKTVEELAQLGGYTVSTLRRIFNNVFHEPVYEWMQARRKEGILDELLNTNN
SISEICYKYGFESLPHFSNFCKKFFGASPRMLRTNKKTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32677; Mature: 32546

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS00028 ZINC_FINGER_C2H2_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSICQGTWDCQNCPKAVDNAIAHIIHPRGYHQPARKCEENFILFLIRGEVLVNSQEYAG
CCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEECCCEECCHHHHH
TMLRAGEFILQAIGSKFEMLAMTECECIYYRFIQPELFCDFRFNHIMKEVSSPLIYSPLK
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHH
IIPELKYFLDGSKSYLSESKVCRDLLSLKRKELAFVLGYYYSDYDLASLVHPLSKYTSTF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
QYFILQNYKKVKTVEELAQLGGYTVSTLRRIFNNVFHEPVYEWMQARRKEGILDELLNTN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
NSISEICYKYGFESLPHFSNFCKKFFGASPRMLRTNKKTI
CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCC
>Mature Secondary Structure 
SSICQGTWDCQNCPKAVDNAIAHIIHPRGYHQPARKCEENFILFLIRGEVLVNSQEYAG
CCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEECCCEECCHHHHH
TMLRAGEFILQAIGSKFEMLAMTECECIYYRFIQPELFCDFRFNHIMKEVSSPLIYSPLK
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHH
IIPELKYFLDGSKSYLSESKVCRDLLSLKRKELAFVLGYYYSDYDLASLVHPLSKYTSTF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
QYFILQNYKKVKTVEELAQLGGYTVSTLRRIFNNVFHEPVYEWMQARRKEGILDELLNTN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
NSISEICYKYGFESLPHFSNFCKKFFGASPRMLRTNKKTI
CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA