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The map label for this gene is rhaT [H]

Identifier: 29348362

GI number: 29348362

Start: 3720092

End: 3721099

Strand: Reverse

Name: rhaT [H]

Synonym: BT_2953

Alternate gene names: 29348362

Gene position: 3721099-3720092 (Counterclockwise)

Preceding gene: 29348363

Following gene: 29348361

Centisome position: 59.44

GC content: 44.05

Gene sequence:

>1008_bases
ATGGAAACTACAGTTATTTCGGGTTTCTTATTAATTCTGCTGGCTGGTGGTTGTTCCGGCACGTTTGCTTTGCCTTTTAA
ACACAACTCACAGTGGAAATGGGAAAACAATTGGTTTATCTGGAGTATCATCGCTCTTCTTGTCGCTCCCTGGATAATGG
CATTTATCTCTATTCCTGACTTGGAAAGTGTATATGCTCATGAAAGCAACACGGTACTGCTAGTGGCTTTCTTCGGCCTT
TTATGGGGAATTGGCGCTATACTATTCGGAAAAGGAATTGATTATCTGGGAGTTTCGCTCAGTCTTCCCATTATGCAAGG
ATTGATTAATGTGGTAGGGACTTTGATGCCTGTCATTCTCAGAAACCCTTCGGAATTGCTAACACCTACGGGACTAAAGT
TACTTACAGGTACAGTAATTATTCTTGCCGGAATCATTTTCTTTGCGATAGCAGGGCACAACAGAGATAGCAAAAGCCGC
CAGACGCACTCTGAAACACCTATTAAGAAAAATTTCAGGAAAGGGTTAATTATCTGTTTGCTTGCAGGAATATTCGGACC
TATGATTAACTTTGCTTTCGTTTATGGGGCACCCTTACAAGAAAAGGCTGTAGCAACGGGAGCATCTTCTCTTTATGCAG
CCAACGTGATATGGAGTATCGCTTTGAGTGCCGGATTTATTATTAATCTCCTTGAATGTATCCGTTTGTTCGGCAAGAAT
CAATCTTGGAAAACTTACCGACATCGTACAACCGGAGGCCTGATAATGGCTTCTCTGGCAGGGGTATTATGGTATCTGAG
CATTATGTTCTATGGTATGGGAGGCAGTTTTATGGGAGTTTTAGGAGCTTCTGTGGGCTGGGCTACCATGCAATCGACAG
CTATTATTGCAGGTAATGTGGCCGGACTTGCTTCCGGCGAGTGGAAAGGAGCTACCCGCTATGCCATCCGGATGATGGTG
ATAGGATTGGTATGTCTCATCGGAGGAGTGGTGGTGATTGCCCTCTAA

Upstream 100 bases:

>100_bases
CTGAATGATTTTGAATTTTTCGAATTAACAGAGTCTCAAAAGTCCCAACTGCGGGAATGCGTAACTAAAATCGTTTCACT
CACCGAAAATTAAAACAAGT

Downstream 100 bases:

>100_bases
CGACTATACTTAACTATTTATATTGACTTAATTATTATGTTATTCAAAAAGTCTAACTTATGGAGAATTTAGCCATTTCA
TTTTTTGAACGAATAAAAGA

Product: rhamnose-proton symporter

Products: Proton [Cytoplasm]; L-rhamnose [Cytoplasm] [C]

Alternate protein names: L-rhamnose-H(+) transport protein [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
METTVISGFLLILLAGGCSGTFALPFKHNSQWKWENNWFIWSIIALLVAPWIMAFISIPDLESVYAHESNTVLLVAFFGL
LWGIGAILFGKGIDYLGVSLSLPIMQGLINVVGTLMPVILRNPSELLTPTGLKLLTGTVIILAGIIFFAIAGHNRDSKSR
QTHSETPIKKNFRKGLIICLLAGIFGPMINFAFVYGAPLQEKAVATGASSLYAANVIWSIALSAGFIINLLECIRLFGKN
QSWKTYRHRTTGGLIMASLAGVLWYLSIMFYGMGGSFMGVLGASVGWATMQSTAIIAGNVAGLASGEWKGATRYAIRMMV
IGLVCLIGGVVVIAL

Sequences:

>Translated_335_residues
METTVISGFLLILLAGGCSGTFALPFKHNSQWKWENNWFIWSIIALLVAPWIMAFISIPDLESVYAHESNTVLLVAFFGL
LWGIGAILFGKGIDYLGVSLSLPIMQGLINVVGTLMPVILRNPSELLTPTGLKLLTGTVIILAGIIFFAIAGHNRDSKSR
QTHSETPIKKNFRKGLIICLLAGIFGPMINFAFVYGAPLQEKAVATGASSLYAANVIWSIALSAGFIINLLECIRLFGKN
QSWKTYRHRTTGGLIMASLAGVLWYLSIMFYGMGGSFMGVLGASVGWATMQSTAIIAGNVAGLASGEWKGATRYAIRMMV
IGLVCLIGGVVVIAL
>Mature_335_residues
METTVISGFLLILLAGGCSGTFALPFKHNSQWKWENNWFIWSIIALLVAPWIMAFISIPDLESVYAHESNTVLLVAFFGL
LWGIGAILFGKGIDYLGVSLSLPIMQGLINVVGTLMPVILRNPSELLTPTGLKLLTGTVIILAGIIFFAIAGHNRDSKSR
QTHSETPIKKNFRKGLIICLLAGIFGPMINFAFVYGAPLQEKAVATGASSLYAANVIWSIALSAGFIINLLECIRLFGKN
QSWKTYRHRTTGGLIMASLAGVLWYLSIMFYGMGGSFMGVLGASVGWATMQSTAIIAGNVAGLASGEWKGATRYAIRMMV
IGLVCLIGGVVVIAL

Specific function: Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system) [H]

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the L-rhamnose transporter (TC 2.A.7.6) family [H]

Homologues:

Organism=Escherichia coli, GI1790341, Length=336, Percent_Identity=30.0595238095238, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004673
- InterPro:   IPR010476 [H]

Pfam domain/function: PF06379 RhaT [H]

EC number: NA

Molecular weight: Translated: 36011; Mature: 36011

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METTVISGFLLILLAGGCSGTFALPFKHNSQWKWENNWFIWSIIALLVAPWIMAFISIPD
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCC
LESVYAHESNTVLLVAFFGLLWGIGAILFGKGIDYLGVSLSLPIMQGLINVVGTLMPVIL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCEEHHHHHHHHHHHHHHHHHHHH
RNPSELLTPTGLKLLTGTVIILAGIIFFAIAGHNRDSKSRQTHSETPIKKNFRKGLIICL
CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LAGIFGPMINFAFVYGAPLQEKAVATGASSLYAANVIWSIALSAGFIINLLECIRLFGKN
HHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QSWKTYRHRTTGGLIMASLAGVLWYLSIMFYGMGGSFMGVLGASVGWATMQSTAIIAGNV
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCEEEECCC
AGLASGEWKGATRYAIRMMVIGLVCLIGGVVVIAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
METTVISGFLLILLAGGCSGTFALPFKHNSQWKWENNWFIWSIIALLVAPWIMAFISIPD
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCC
LESVYAHESNTVLLVAFFGLLWGIGAILFGKGIDYLGVSLSLPIMQGLINVVGTLMPVIL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCEEHHHHHHHHHHHHHHHHHHHH
RNPSELLTPTGLKLLTGTVIILAGIIFFAIAGHNRDSKSRQTHSETPIKKNFRKGLIICL
CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LAGIFGPMINFAFVYGAPLQEKAVATGASSLYAANVIWSIALSAGFIINLLECIRLFGKN
HHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QSWKTYRHRTTGGLIMASLAGVLWYLSIMFYGMGGSFMGVLGASVGWATMQSTAIIAGNV
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCEEEECCC
AGLASGEWKGATRYAIRMMVIGLVCLIGGVVVIAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; L-rhamnose [Periplasm] [C]

Specific reaction: Proton [Periplasm] + L-rhamnose [Periplasm] = Proton [Cytoplasm] + L-rhamnose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA