| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29348357
Identifier: 29348357
GI number: 29348357
Start: 3710631
End: 3713324
Strand: Reverse
Name: 29348357
Synonym: BT_2948
Alternate gene names: NA
Gene position: 3713324-3710631 (Counterclockwise)
Preceding gene: 29348358
Following gene: 29348354
Centisome position: 59.31
GC content: 41.87
Gene sequence:
>2694_bases ATGAAAATGAAATTATTGATACTGGCCGTTCTTCCATTCCTGACGCCGATTAACATGAACTCACAAGAGGAAAAAGCCTC ATGGGTACAGTATGTCAACCCATTGATTGGAACAGAAGTATGGCAATCCGGAGTAGCGGTTGCCGGGCATGAAGATCCTT CGGGATATACTTTTCCCGGAGTGACAGAGCCTTTCGGGATGACAGAATGGACTGCCCATACTTTAGAGAGCAAGCACGCT GGAACGCTGCACCATCGGGTACCCTACTGGTATAAACATAACTATATTTCGGGATTTATGGGAACACACTATCCAAGTGG GGCCGTCATGTTCGATTATGGTGCTGTTGAACTAATGCCGGTTGTCGGACAACTGAAATGCAGGCCCGAAGAGCGTAGTT CTTCTTTTACCCATATAACCGAAAAGTCAAAACCTCACTTCTACGAAGTCATGTTGGACGACTATCAGGTAAAAGCTCAA TTATCGGCTACAAAAACTTCAGCTATCCTGCAATTTACCTATCCCCAGTCGGATAGTGCTTACGTAGTGGTAGATGCTAT GCCTTCCATGTTTACAGCCGGAGCACCGGGCTACATTCACATAGACCCGGTACGAAAAGAAATTTCCGGTAAAAGCATAC AATCTGCCAGAGGATATCGGGAAACCGGATATTTTGTAGTCCGTTTCGATAAGGATTTCGACTCTTTCGGCACGTTTAAT CTTAATAATGATTATCCCGAAGTAATCGAAGAGAAATATCTGTTCACTCAAAAAGAAGGCAAGTGGGTCAATGGCTTAAA AGGGATTTATACACAGGACTCAAAGGGGGTCGGACATCTGCGGAGTGAAAAAATCGATCCGGTTATCGATTTTGACTGGG ACTGGTATAAACCTGCGGATGATTTCAGTTTTAATGATTACCAGGTGACCTGGAGCGGTAAACTCAAAGCTCCCTCTACC GGTGAATATACATTAGGGATACAAGCTGACGACGGAGCACGATTATATATCAACGGAGAATTGCTCATCGATGACTGGAA ATCTCATAGTTTCAGCTATCAACCTACCCAAAAGAAGATTTCTCTGGAAGCCGGTAAAATGTATGATATAAAATTGGAAT ATTATCAGCATGAATGGAGCTCACGGATAAAACTGAGTTGGATCAGGCCTGATAAAAAGTCATCAACATCCCTTCTGACT GGCAATCGACATTTGGAATCGTCTACCAAAATAGGGGGATATATCCGTTTTAAAACCGGAAAAAATGAAGTAATTAAAGC CATCGTTGGCACATCCTTTATTAGTGTGGAACAGGCACGGATAAATCTGGAAAGAGAAATCGGAGCCAAAAGTATGGAAA CAATCAGTGCACAAACAGAAGCATTATGGAATAAAGAATTATCAGTCATCGATTTGCCCGGAGCTACAGAACAAGATAAA ATTGTTTTTTATACAGCGCTATATCACTCTTTCCTGTTGCCCAGAAGTCTATCTGAAGATGGAAAATACAGAAGTCCGTT TGATGGAAAAGTACATAAGGGTATTAGCTTTACAGACTATTCTATATGGGACACATTCAGAGCGACCCATCCTCTGTTCG TATTACTGAAACCCGATTTTGCGGGAGATCTCATAACCGGACTCCTCCATGCCTACGATGAGGGAGGCTGGCTTCCCAAA TGGCCTAATCCGGGATATACCAACTGCATGATGGGAACTCATAGTGATGCCATAATAGCGGATGCTTATGTAAAAGGAGT GCGTAACTTTGATGTAGAGAAAGCTAAAAAAGCAGTGCTGAAAAATGCGTATGAAAAGGGTAACCACATTGCTTGGGGAC GCTTGGGCATTATGGACTACGAACGATTGGGATATGTACCTGTTGATAAATATGGAGAATCAGTAGCCAGAACGATGGAG TTTGCCTATGATGATTATTGTCTCTCCCGTTTCTTTGCCGAAAAAGGTGAACCGGACTTATCGGATAAACTAGGTAAACG AAGCAAAAATTTCAGGAACGTACTGGATAAGGAAACCAAAATGGTTCGTGCGCGTAAAGCAGATGGTTCATGGAGTAATC CGGAAGATTACGATATCAGCGTATGGAGTGGTTTTAACCCCAAAGGAGTGTACAACTATAAAAAGAATTATACGTTGTTC GTTCCCCATGATGTTCCCGAACTAATTCGCTTTTTGGGAGGTACCGATTCTTTAGCCGTTTTTATGGATGAACTATTCGA TAAAGATATTTACTATGTGGGTGACGAATTTGTGATGCATGCTCCCTATATGTATAATCTCTGTAAAAGACCGTGGATGA CTCAAAAAAGAATATATGATATAGTCAATAAATACTATCTGCCCACACCTAGCGGACTGCCGGGAAATGACGACTGTGGA CAATTAAGTTCATGGTATATCTTCAGTGCGATGGGATTCTATCCCATGTGTCCGGCTTCTATTGAATATCAGTTAGGAGT TCCCTGTCTGCCGGGCTTTGTATTGCATTTGCCTCAAAATAGAACATTCACAATTAAAACAAAGAATTTCGGCAAAGGCA ATTGTTATGTACGCGCTGTATATCTCAATGGCAAGCCTCACCGTAGTTCTGTCATAACTCATTCAGATATTATTAACGGT GGGGAGATTTTATTCGAATTAACAGATAAGCCTGCATATAATTGGTTTCAATAG
Upstream 100 bases:
>100_bases ATCTTGAAAAATATGATTTAAGGTTTTCTACTGTAGCGGCTTATATGTATATGAGAGCTGCCAATTACAAAAGAATACTC AACGATTAAACTACAGTACC
Downstream 100 bases:
>100_bases GTAATATATAAATAGGAGTTTTGTGGGTGAAGTGACTATACTGATTTTAAGTGGCAGTTATTGTCCCGGCTTGATAATCA ACCGCAGTACAAACCAAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Sugar Hydrolase; Secreted Protein; Outer Membrane Protein; Glycoside Hydrolase Family Protein; Cell Wall Antigen; Glycosyl Hydrolase; Exported Alpha-1 2-Mannosidase; Antigen; Glycosyltransferase; Alpha-1 2-Mannosidase Protein; Mannosidase
Number of amino acids: Translated: 897; Mature: 897
Protein sequence:
>897_residues MKMKLLILAVLPFLTPINMNSQEEKASWVQYVNPLIGTEVWQSGVAVAGHEDPSGYTFPGVTEPFGMTEWTAHTLESKHA GTLHHRVPYWYKHNYISGFMGTHYPSGAVMFDYGAVELMPVVGQLKCRPEERSSSFTHITEKSKPHFYEVMLDDYQVKAQ LSATKTSAILQFTYPQSDSAYVVVDAMPSMFTAGAPGYIHIDPVRKEISGKSIQSARGYRETGYFVVRFDKDFDSFGTFN LNNDYPEVIEEKYLFTQKEGKWVNGLKGIYTQDSKGVGHLRSEKIDPVIDFDWDWYKPADDFSFNDYQVTWSGKLKAPST GEYTLGIQADDGARLYINGELLIDDWKSHSFSYQPTQKKISLEAGKMYDIKLEYYQHEWSSRIKLSWIRPDKKSSTSLLT GNRHLESSTKIGGYIRFKTGKNEVIKAIVGTSFISVEQARINLEREIGAKSMETISAQTEALWNKELSVIDLPGATEQDK IVFYTALYHSFLLPRSLSEDGKYRSPFDGKVHKGISFTDYSIWDTFRATHPLFVLLKPDFAGDLITGLLHAYDEGGWLPK WPNPGYTNCMMGTHSDAIIADAYVKGVRNFDVEKAKKAVLKNAYEKGNHIAWGRLGIMDYERLGYVPVDKYGESVARTME FAYDDYCLSRFFAEKGEPDLSDKLGKRSKNFRNVLDKETKMVRARKADGSWSNPEDYDISVWSGFNPKGVYNYKKNYTLF VPHDVPELIRFLGGTDSLAVFMDELFDKDIYYVGDEFVMHAPYMYNLCKRPWMTQKRIYDIVNKYYLPTPSGLPGNDDCG QLSSWYIFSAMGFYPMCPASIEYQLGVPCLPGFVLHLPQNRTFTIKTKNFGKGNCYVRAVYLNGKPHRSSVITHSDIING GEILFELTDKPAYNWFQ
Sequences:
>Translated_897_residues MKMKLLILAVLPFLTPINMNSQEEKASWVQYVNPLIGTEVWQSGVAVAGHEDPSGYTFPGVTEPFGMTEWTAHTLESKHA GTLHHRVPYWYKHNYISGFMGTHYPSGAVMFDYGAVELMPVVGQLKCRPEERSSSFTHITEKSKPHFYEVMLDDYQVKAQ LSATKTSAILQFTYPQSDSAYVVVDAMPSMFTAGAPGYIHIDPVRKEISGKSIQSARGYRETGYFVVRFDKDFDSFGTFN LNNDYPEVIEEKYLFTQKEGKWVNGLKGIYTQDSKGVGHLRSEKIDPVIDFDWDWYKPADDFSFNDYQVTWSGKLKAPST GEYTLGIQADDGARLYINGELLIDDWKSHSFSYQPTQKKISLEAGKMYDIKLEYYQHEWSSRIKLSWIRPDKKSSTSLLT GNRHLESSTKIGGYIRFKTGKNEVIKAIVGTSFISVEQARINLEREIGAKSMETISAQTEALWNKELSVIDLPGATEQDK IVFYTALYHSFLLPRSLSEDGKYRSPFDGKVHKGISFTDYSIWDTFRATHPLFVLLKPDFAGDLITGLLHAYDEGGWLPK WPNPGYTNCMMGTHSDAIIADAYVKGVRNFDVEKAKKAVLKNAYEKGNHIAWGRLGIMDYERLGYVPVDKYGESVARTME FAYDDYCLSRFFAEKGEPDLSDKLGKRSKNFRNVLDKETKMVRARKADGSWSNPEDYDISVWSGFNPKGVYNYKKNYTLF VPHDVPELIRFLGGTDSLAVFMDELFDKDIYYVGDEFVMHAPYMYNLCKRPWMTQKRIYDIVNKYYLPTPSGLPGNDDCG QLSSWYIFSAMGFYPMCPASIEYQLGVPCLPGFVLHLPQNRTFTIKTKNFGKGNCYVRAVYLNGKPHRSSVITHSDIING GEILFELTDKPAYNWFQ >Mature_897_residues MKMKLLILAVLPFLTPINMNSQEEKASWVQYVNPLIGTEVWQSGVAVAGHEDPSGYTFPGVTEPFGMTEWTAHTLESKHA GTLHHRVPYWYKHNYISGFMGTHYPSGAVMFDYGAVELMPVVGQLKCRPEERSSSFTHITEKSKPHFYEVMLDDYQVKAQ LSATKTSAILQFTYPQSDSAYVVVDAMPSMFTAGAPGYIHIDPVRKEISGKSIQSARGYRETGYFVVRFDKDFDSFGTFN LNNDYPEVIEEKYLFTQKEGKWVNGLKGIYTQDSKGVGHLRSEKIDPVIDFDWDWYKPADDFSFNDYQVTWSGKLKAPST GEYTLGIQADDGARLYINGELLIDDWKSHSFSYQPTQKKISLEAGKMYDIKLEYYQHEWSSRIKLSWIRPDKKSSTSLLT GNRHLESSTKIGGYIRFKTGKNEVIKAIVGTSFISVEQARINLEREIGAKSMETISAQTEALWNKELSVIDLPGATEQDK IVFYTALYHSFLLPRSLSEDGKYRSPFDGKVHKGISFTDYSIWDTFRATHPLFVLLKPDFAGDLITGLLHAYDEGGWLPK WPNPGYTNCMMGTHSDAIIADAYVKGVRNFDVEKAKKAVLKNAYEKGNHIAWGRLGIMDYERLGYVPVDKYGESVARTME FAYDDYCLSRFFAEKGEPDLSDKLGKRSKNFRNVLDKETKMVRARKADGSWSNPEDYDISVWSGFNPKGVYNYKKNYTLF VPHDVPELIRFLGGTDSLAVFMDELFDKDIYYVGDEFVMHAPYMYNLCKRPWMTQKRIYDIVNKYYLPTPSGLPGNDDCG QLSSWYIFSAMGFYPMCPASIEYQLGVPCLPGFVLHLPQNRTFTIKTKNFGKGNCYVRAVYLNGKPHRSSVITHSDIING GEILFELTDKPAYNWFQ
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 102286; Mature: 102286
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: PS00334 MYB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMKLLILAVLPFLTPINMNSQEEKASWVQYVNPLIGTEVWQSGVAVAGHEDPSGYTFPG CCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC VTEPFGMTEWTAHTLESKHAGTLHHRVPYWYKHNYISGFMGTHYPSGAVMFDYGAVELMP CCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCEEEEE VVGQLKCRPEERSSSFTHITEKSKPHFYEVMLDDYQVKAQLSATKTSAILQFTYPQSDSA HHCCEECCCHHHCCCEEEEECCCCCCEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCC YVVVDAMPSMFTAGAPGYIHIDPVRKEISGKSIQSARGYRETGYFVVRFDKDFDSFGTFN EEEEECCCHHHHCCCCCEEEECHHHHHCCCCCHHHHCCCCCCCEEEEEECCCCCCCCEEC LNNDYPEVIEEKYLFTQKEGKWVNGLKGIYTQDSKGVGHLRSEKIDPVIDFDWDWYKPAD CCCCCHHHHHHHHEEECCCCCCCCCCCCEEECCCCCCCCHHHCCCCCEEECCCCCCCCCC DFSFNDYQVTWSGKLKAPSTGEYTLGIQADDGARLYINGELLIDDWKSHSFSYQPTQKKI CCCCCCEEEEECCEECCCCCCCEEEEEEECCCCEEEEECEEEEECCCCCCCCCCCCCCEE SLEAGKMYDIKLEYYQHEWSSRIKLSWIRPDKKSSTSLLTGNRHLESSTKIGGYIRFKTG EECCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEECC KNEVIKAIVGTSFISVEQARINLEREIGAKSMETISAQTEALWNKELSVIDLPGATEQDK HHHHHHHHHCCHHEEEEHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC IVFYTALYHSFLLPRSLSEDGKYRSPFDGKVHKGISFTDYSIWDTFRATHPLFVLLKPDF EEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCCCCCEEEEECCCC AGDLITGLLHAYDEGGWLPKWPNPGYTNCMMGTHSDAIIADAYVKGVRNFDVEKAKKAVL CHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEHHHHHHHHCCCCHHHHHHHHH KNAYEKGNHIAWGRLGIMDYERLGYVPVDKYGESVARTMEFAYDDYCLSRFFAEKGEPDL HHHHHCCCEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH SDKLGKRSKNFRNVLDKETKMVRARKADGSWSNPEDYDISVWSGFNPKGVYNYKKNYTLF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCEEEE VPHDVPELIRFLGGTDSLAVFMDELFDKDIYYVGDEFVMHAPYMYNLCKRPWMTQKRIYD CCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCHHEEECCHHHHHHCCCCCHHHHHHH IVNKYYLPTPSGLPGNDDCGQLSSWYIFSAMGFYPMCPASIEYQLGVPCLPGFVLHLPQN HHHHEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEECCCC RTFTIKTKNFGKGNCYVRAVYLNGKPHRSSVITHSDIINGGEILFELTDKPAYNWFQ CEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEHHHCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure MKMKLLILAVLPFLTPINMNSQEEKASWVQYVNPLIGTEVWQSGVAVAGHEDPSGYTFPG CCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC VTEPFGMTEWTAHTLESKHAGTLHHRVPYWYKHNYISGFMGTHYPSGAVMFDYGAVELMP CCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCEEEEE VVGQLKCRPEERSSSFTHITEKSKPHFYEVMLDDYQVKAQLSATKTSAILQFTYPQSDSA HHCCEECCCHHHCCCEEEEECCCCCCEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCC YVVVDAMPSMFTAGAPGYIHIDPVRKEISGKSIQSARGYRETGYFVVRFDKDFDSFGTFN EEEEECCCHHHHCCCCCEEEECHHHHHCCCCCHHHHCCCCCCCEEEEEECCCCCCCCEEC LNNDYPEVIEEKYLFTQKEGKWVNGLKGIYTQDSKGVGHLRSEKIDPVIDFDWDWYKPAD CCCCCHHHHHHHHEEECCCCCCCCCCCCEEECCCCCCCCHHHCCCCCEEECCCCCCCCCC DFSFNDYQVTWSGKLKAPSTGEYTLGIQADDGARLYINGELLIDDWKSHSFSYQPTQKKI CCCCCCEEEEECCEECCCCCCCEEEEEEECCCCEEEEECEEEEECCCCCCCCCCCCCCEE SLEAGKMYDIKLEYYQHEWSSRIKLSWIRPDKKSSTSLLTGNRHLESSTKIGGYIRFKTG EECCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEECC KNEVIKAIVGTSFISVEQARINLEREIGAKSMETISAQTEALWNKELSVIDLPGATEQDK HHHHHHHHHCCHHEEEEHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC IVFYTALYHSFLLPRSLSEDGKYRSPFDGKVHKGISFTDYSIWDTFRATHPLFVLLKPDF EEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCCCCCEEEEECCCC AGDLITGLLHAYDEGGWLPKWPNPGYTNCMMGTHSDAIIADAYVKGVRNFDVEKAKKAVL CHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEHHHHHHHHCCCCHHHHHHHHH KNAYEKGNHIAWGRLGIMDYERLGYVPVDKYGESVARTMEFAYDDYCLSRFFAEKGEPDL HHHHHCCCEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH SDKLGKRSKNFRNVLDKETKMVRARKADGSWSNPEDYDISVWSGFNPKGVYNYKKNYTLF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCEEEE VPHDVPELIRFLGGTDSLAVFMDELFDKDIYYVGDEFVMHAPYMYNLCKRPWMTQKRIYD CCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCHHEEECCHHHHHHCCCCCHHHHHHH IVNKYYLPTPSGLPGNDDCGQLSSWYIFSAMGFYPMCPASIEYQLGVPCLPGFVLHLPQN HHHHEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEECCCC RTFTIKTKNFGKGNCYVRAVYLNGKPHRSSVITHSDIINGGEILFELTDKPAYNWFQ CEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEHHHCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA