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The map label for this gene is xynD [H]

Identifier: 29348307

GI number: 29348307

Start: 3626229

End: 3627212

Strand: Reverse

Name: xynD [H]

Synonym: BT_2898

Alternate gene names: 29348307

Gene position: 3627212-3626229 (Counterclockwise)

Preceding gene: 29348308

Following gene: 29348306

Centisome position: 57.94

GC content: 40.35

Gene sequence:

>984_bases
ATGCTAAAGAAACGATTCTATATTCTACTGTTCTTCTGCCTGCTTCTTGGAGGAAATGTAAATAGCAGTACAGTGGATAA
AGGTGATAACAATGCTCCGTTTGAGAACAAACGTACGGAAACGGACTACTTGCCTATTGCTGATCCGTTTGTGATGCTTT
ACAATAATAAGTACTATGCTTATGGCACCGGAGGTACAGTGAACGAAGGATTTGCCTGTTTTTCTTCTGATGATCTGAAA
AACTGGAAACGTGAGAGGCAGGCGCTTTCTGCAGATGATTCATATGGTAAATGGGGATTCTGGGCGCCGGAGGTTTATTA
TATTCAATCAAAGAAGAAATTTTATATGTTTTATTCTGTAGAAGAACATATCTGTGTGGCTACCTCAGATTCTCCGGTAG
GACCTTTTCGGCAAGAGTCGAAGCAACCTATCTGGGAGGAGAAGAGTATAGATACCTCTCTTTTCATTGATGACGATGGT
ACTCCATACCTCTATTTTGTACGTTTCACAGATGGAAATGTTATCTGGGTAGCTCAGATGACCGATGATTTAATGAAGAT
TAAAAAGGAGACTTTATCGGAATGTATAAAAGCAGAAGAGCCGTGGGAACTATTGCAGGCTAAAGTAGCGGAAGGACCTT
CGGTGCTGAAAAAGAAGGGTATGTATTATTTGATTTACTCTGCCAATCACTATCAGAATAAAGGCTATGGAGTAGGATAT
GCCACTTCTAAGTCGCCAATGGGACCATGGACTAAGTATGACAAGAATCCGCTCTTGCAAGGGGATGAGTCTACCGGACT
GGTAGGTACTGGACATGGTGCTCCTTTTCAATGCAAAGACGGCAGTTGGAAATATATTTTTCACGCTCATTGGAATAAAG
AGAAAATACACCCGCGTACTTCATACTTTAAAGACTTTACCATATCTAAACAAGGTGTCGTTTCTATAACCGGAAAGGTT
ATTAAACCGAAAGTTATAAAGTAA

Upstream 100 bases:

>100_bases
CTTTGCACCGGGATGGACGGTAGCCTCTTTGTGGGAGCTATTGACTCCGGGACGTGCCGAAAAGATGTTGGTTAAGTAAT
TCATCTAATCTGTGATATAT

Downstream 100 bases:

>100_bases
ACGGTTATCTTTATTTTTTCTGAGCAAATATTGTTCAAAAAGTAGGAGACTTCAGATATTAATGATTGATACGTCAGATA
TTAATAGTTGGCATGTCAGG

Product: endo-1,4-beta-xylanase D

Products: NA

Alternate protein names: AXH; AXH-m2,3; AXH-m23; Alpha-L-arabinofuranosidase; AF [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MLKKRFYILLFFCLLLGGNVNSSTVDKGDNNAPFENKRTETDYLPIADPFVMLYNNKYYAYGTGGTVNEGFACFSSDDLK
NWKRERQALSADDSYGKWGFWAPEVYYIQSKKKFYMFYSVEEHICVATSDSPVGPFRQESKQPIWEEKSIDTSLFIDDDG
TPYLYFVRFTDGNVIWVAQMTDDLMKIKKETLSECIKAEEPWELLQAKVAEGPSVLKKKGMYYLIYSANHYQNKGYGVGY
ATSKSPMGPWTKYDKNPLLQGDESTGLVGTGHGAPFQCKDGSWKYIFHAHWNKEKIHPRTSYFKDFTISKQGVVSITGKV
IKPKVIK

Sequences:

>Translated_327_residues
MLKKRFYILLFFCLLLGGNVNSSTVDKGDNNAPFENKRTETDYLPIADPFVMLYNNKYYAYGTGGTVNEGFACFSSDDLK
NWKRERQALSADDSYGKWGFWAPEVYYIQSKKKFYMFYSVEEHICVATSDSPVGPFRQESKQPIWEEKSIDTSLFIDDDG
TPYLYFVRFTDGNVIWVAQMTDDLMKIKKETLSECIKAEEPWELLQAKVAEGPSVLKKKGMYYLIYSANHYQNKGYGVGY
ATSKSPMGPWTKYDKNPLLQGDESTGLVGTGHGAPFQCKDGSWKYIFHAHWNKEKIHPRTSYFKDFTISKQGVVSITGKV
IKPKVIK
>Mature_327_residues
MLKKRFYILLFFCLLLGGNVNSSTVDKGDNNAPFENKRTETDYLPIADPFVMLYNNKYYAYGTGGTVNEGFACFSSDDLK
NWKRERQALSADDSYGKWGFWAPEVYYIQSKKKFYMFYSVEEHICVATSDSPVGPFRQESKQPIWEEKSIDTSLFIDDDG
TPYLYFVRFTDGNVIWVAQMTDDLMKIKKETLSECIKAEEPWELLQAKVAEGPSVLKKKGMYYLIYSANHYQNKGYGVGY
ATSKSPMGPWTKYDKNPLLQGDESTGLVGTGHGAPFQCKDGSWKYIFHAHWNKEKIHPRTSYFKDFTISKQGVVSITGKV
IKPKVIK

Specific function: Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short- chain arabinoxylo-oligosaccharide (AXOS) degradation. Is more active on wheat bran AXOS than on wheat water-extractable AX and rye

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR006710 [H]

Pfam domain/function: PF03422 CBM_6; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 37455; Mature: 37455

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKRFYILLFFCLLLGGNVNSSTVDKGDNNAPFENKRTETDYLPIADPFVMLYNNKYYA
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE
YGTGGTVNEGFACFSSDDLKNWKRERQALSADDSYGKWGFWAPEVYYIQSKKKFYMFYSV
EECCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEE
EEHICVATSDSPVGPFRQESKQPIWEEKSIDTSLFIDDDGTPYLYFVRFTDGNVIWVAQM
CCEEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCEEEEEEC
TDDLMKIKKETLSECIKAEEPWELLQAKVAEGPSVLKKKGMYYLIYSANHYQNKGYGVGY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCEEEE
ATSKSPMGPWTKYDKNPLLQGDESTGLVGTGHGAPFQCKDGSWKYIFHAHWNKEKIHPRT
ECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCEEEEEEEECCCCCCCCCH
SYFKDFTISKQGVVSITGKVIKPKVIK
HHHCCEECCCCCEEEEECEECCCCCCC
>Mature Secondary Structure
MLKKRFYILLFFCLLLGGNVNSSTVDKGDNNAPFENKRTETDYLPIADPFVMLYNNKYYA
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE
YGTGGTVNEGFACFSSDDLKNWKRERQALSADDSYGKWGFWAPEVYYIQSKKKFYMFYSV
EECCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEE
EEHICVATSDSPVGPFRQESKQPIWEEKSIDTSLFIDDDGTPYLYFVRFTDGNVIWVAQM
CCEEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCEEEEEEC
TDDLMKIKKETLSECIKAEEPWELLQAKVAEGPSVLKKKGMYYLIYSANHYQNKGYGVGY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCEEEE
ATSKSPMGPWTKYDKNPLLQGDESTGLVGTGHGAPFQCKDGSWKYIFHAHWNKEKIHPRT
ECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCEEEEEEEECCCCCCCCCH
SYFKDFTISKQGVVSITGKVIKPKVIK
HHHCCEECCCCCEEEEECEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 10658653 [H]