| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348265
Identifier: 29348265
GI number: 29348265
Start: 3566770
End: 3567984
Strand: Reverse
Name: 29348265
Synonym: BT_2856
Alternate gene names: NA
Gene position: 3567984-3566770 (Counterclockwise)
Preceding gene: 29348266
Following gene: 29348264
Centisome position: 56.99
GC content: 44.94
Gene sequence:
>1215_bases ATGAAACAATTTATCAAACATACGCCCTATCTGATGTCACTACTGATGCTGTTGGGGATTACATCTTGCACAAAGATGGA CGAATATCTGAAATATACGGATGGAAAGGAAATTCTTTATACGGGTATTCCTGATTCTATCGCCATGTACTCCGGCTACA ACCGGGTGGTCTTCCGCGGAGTACTGGCATCCGACCCTAAAATAGCCAAGATAAAGATATACTGGAACTTGAAACAGGAC TCTCTGGAACAGGATATCCGGAGAGAAGGGAATGATAATGTGCTGATTATACCGATTCCTCTGGAAGAAGGGACCTATAA TTTCGAAATGCATACCTATGATAAAGACGGATTGCATCCTTCGGTTCCTTTCAACCTTACCGGAACGTCATATGGTGACT CCTACAAAGACGGGCTGGTCAACCGCTTGGTGAAGAAGGTAGAAAAGATAGAAGATGATGTAACGATCGACTGGTCGCCG GCAGAACCGACAGCTCTTTATACGATGGTACATTATACCGATAATTCGGGAAAAGTACAGGAACTGAAGATCGAAAACAG CGAAGAAGAAACCGTCCTGAAGGATTACAAGAGTATGACCAAGTTTGATGTGCAGACTTACTTCCTGCCGGATGAAATGT CGATTGATACCTTTAAAACGGCAGTTGTCTCTTACGGAGTCAGTGAAGACATTACCGACTTGTATCTGAAGAACTACAAA CGTCCGTTTGAAGGAAGGGATAAGAATGCGGATAATAAATGGGGAATACTCGTTGACTGGGACTTCACTCCCAATATCCT GAATCAGAGTAATGGAAAAGGCGGTTGGTCCGAAGACTGGGGCAATTATTCCATCCATCTGGAATCGAAAGACTGGGATG GAGAAGGAATCACGAATGGTAAGGTCTATCAAAGTTTTGAACTTCCGGCTGGAAATTATCAATTGGAGTGTGAACTCGAA GGGGGCAGTAACGGAATGAACGGATATCTGGCAGCCAGCCGCGGCAGCGTATTGCCGGACATTGACCGATTGAAAGAAGA AGCATTGGGATATAGCCAGTACGGTGACTCCAATATGGGAGGAAAGCATACCCTGACCTTCTCTTTGGCGGAACCTGCTA CTGTTTCGGTAGGCTGGGTAGTCACCTTCGGATCGTCTACCTGGATGAAAGTGCTCTATATCAAGCTGATGAACATAGCG GATATAGCCGAATAA
Upstream 100 bases:
>100_bases TAACAATTACAACATCTGTTTCACGGAACTCACCTTCTGGGGGAATGATAACGAAGAATAATTCAATGAGTGTTAACCGA CTGATTAAAGCAGAAAGAAT
Downstream 100 bases:
>100_bases TCCGGTTTTCATAAGCGCTCGGAATAGTGGATATACACCATATATGCCCTGCATGCAGGGCATATAGATCCAACGCGCAG GACATATATACGCTACGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MKQFIKHTPYLMSLLMLLGITSCTKMDEYLKYTDGKEILYTGIPDSIAMYSGYNRVVFRGVLASDPKIAKIKIYWNLKQD SLEQDIRREGNDNVLIIPIPLEEGTYNFEMHTYDKDGLHPSVPFNLTGTSYGDSYKDGLVNRLVKKVEKIEDDVTIDWSP AEPTALYTMVHYTDNSGKVQELKIENSEEETVLKDYKSMTKFDVQTYFLPDEMSIDTFKTAVVSYGVSEDITDLYLKNYK RPFEGRDKNADNKWGILVDWDFTPNILNQSNGKGGWSEDWGNYSIHLESKDWDGEGITNGKVYQSFELPAGNYQLECELE GGSNGMNGYLAASRGSVLPDIDRLKEEALGYSQYGDSNMGGKHTLTFSLAEPATVSVGWVVTFGSSTWMKVLYIKLMNIA DIAE
Sequences:
>Translated_404_residues MKQFIKHTPYLMSLLMLLGITSCTKMDEYLKYTDGKEILYTGIPDSIAMYSGYNRVVFRGVLASDPKIAKIKIYWNLKQD SLEQDIRREGNDNVLIIPIPLEEGTYNFEMHTYDKDGLHPSVPFNLTGTSYGDSYKDGLVNRLVKKVEKIEDDVTIDWSP AEPTALYTMVHYTDNSGKVQELKIENSEEETVLKDYKSMTKFDVQTYFLPDEMSIDTFKTAVVSYGVSEDITDLYLKNYK RPFEGRDKNADNKWGILVDWDFTPNILNQSNGKGGWSEDWGNYSIHLESKDWDGEGITNGKVYQSFELPAGNYQLECELE GGSNGMNGYLAASRGSVLPDIDRLKEEALGYSQYGDSNMGGKHTLTFSLAEPATVSVGWVVTFGSSTWMKVLYIKLMNIA DIAE >Mature_404_residues MKQFIKHTPYLMSLLMLLGITSCTKMDEYLKYTDGKEILYTGIPDSIAMYSGYNRVVFRGVLASDPKIAKIKIYWNLKQD SLEQDIRREGNDNVLIIPIPLEEGTYNFEMHTYDKDGLHPSVPFNLTGTSYGDSYKDGLVNRLVKKVEKIEDDVTIDWSP AEPTALYTMVHYTDNSGKVQELKIENSEEETVLKDYKSMTKFDVQTYFLPDEMSIDTFKTAVVSYGVSEDITDLYLKNYK RPFEGRDKNADNKWGILVDWDFTPNILNQSNGKGGWSEDWGNYSIHLESKDWDGEGITNGKVYQSFELPAGNYQLECELE GGSNGMNGYLAASRGSVLPDIDRLKEEALGYSQYGDSNMGGKHTLTFSLAEPATVSVGWVVTFGSSTWMKVLYIKLMNIA DIAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45730; Mature: 45730
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQFIKHTPYLMSLLMLLGITSCTKMDEYLKYTDGKEILYTGIPDSIAMYSGYNRVVFRG CCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCEEEEEE VLASDPKIAKIKIYWNLKQDSLEQDIRREGNDNVLIIPIPLEEGTYNFEMHTYDKDGLHP EECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCC SVPFNLTGTSYGDSYKDGLVNRLVKKVEKIEDDVTIDWSPAEPTALYTMVHYTDNSGKVQ CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCEE ELKIENSEEETVLKDYKSMTKFDVQTYFLPDEMSIDTFKTAVVSYGVSEDITDLYLKNYK EEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCC RPFEGRDKNADNKWGILVDWDFTPNILNQSNGKGGWSEDWGNYSIHLESKDWDGEGITNG CCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC KVYQSFELPAGNYQLECELEGGSNGMNGYLAASRGSVLPDIDRLKEEALGYSQYGDSNMG CEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCC GKHTLTFSLAEPATVSVGWVVTFGSSTWMKVLYIKLMNIADIAE CCEEEEEEECCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKQFIKHTPYLMSLLMLLGITSCTKMDEYLKYTDGKEILYTGIPDSIAMYSGYNRVVFRG CCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCEEEEEE VLASDPKIAKIKIYWNLKQDSLEQDIRREGNDNVLIIPIPLEEGTYNFEMHTYDKDGLHP EECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCC SVPFNLTGTSYGDSYKDGLVNRLVKKVEKIEDDVTIDWSPAEPTALYTMVHYTDNSGKVQ CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCEE ELKIENSEEETVLKDYKSMTKFDVQTYFLPDEMSIDTFKTAVVSYGVSEDITDLYLKNYK EEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCC RPFEGRDKNADNKWGILVDWDFTPNILNQSNGKGGWSEDWGNYSIHLESKDWDGEGITNG CCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC KVYQSFELPAGNYQLECELEGGSNGMNGYLAASRGSVLPDIDRLKEEALGYSQYGDSNMG CEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCC GKHTLTFSLAEPATVSVGWVVTFGSSTWMKVLYIKLMNIADIAE CCEEEEEEECCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA