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The map label for this gene is yagH [C]

Identifier: 29348261

GI number: 29348261

Start: 3559566

End: 3561110

Strand: Reverse

Name: yagH [C]

Synonym: BT_2852

Alternate gene names: 29348261

Gene position: 3561110-3559566 (Counterclockwise)

Preceding gene: 29348262

Following gene: 29348260

Centisome position: 56.88

GC content: 48.61

Gene sequence:

>1545_bases
ATGAATACAAAAATCCTTTGCGTATGGATAGCGCTTCTGACTTGTCAGATAGCGGGTGCACAAACAAAGAATGTGACATG
GGGAGATCAGGGAAACGGCACGTATATCAATCCGATATTGAATGCGGACTATTCCGATCCGGATGTCATCAGGGTAGGCG
ATAAGTATTATATGGTAAACTCGGACTTTCATTATATGGGCATGCCGGTGCTGGAATCCGATGATATGATTAACTGGAAG
ATTATCAGTCAGGTGTACCGACGCCTGGACTTTCCGGACTGGGATACGAACGGAAATTATGGAGGAGGCTCATGGGCCCC
CTCTATCCGTCATCATGACGGGAAGTTCTGGATTTACTTCTGTACTCCCCGTGAAGGGCTGATGATGAGTACGGCTACCG
ATCCTCACGGCCCTTGGTCACCTTTGCATTGTGTGAAACGGATTGGCGGATGGGAAGACCCTTGCCCGATATGGGATGAC
AATGGTCAGGCTTATCTGGGACGGAGCCAGTTGGGAGCCGGACCTATCATCTTGCATAAGATGAGCGCCGACGGGAGGAC
CTTGGAAGATGACGGACACGTGATCTATACCGGTCCGGTGGCAGAAGGTACCAAGTTTCACAAGCGGGACGGATATTACT
ATATCAGTATTCCCGAAGGCGGAGTAGGTGAGGGATGGCAGACAATTCTGCGTTCGAAAAACATCTACGGTCCTTACGAG
AAGAAAGTGGTACTGGAAAAAGGTTCTACCAATGTCAACGGACCTCATCAAGGTGCACTGGTAGATACTCCCGAAGGTGA
GTGGTGGTTCTATCACTTCCAGTTGACGGAACCGCTGGGAAGAGTCGTGCATCTGCAACCTGCACATTGGAAAGACGGAT
GGCCCGTGATTGGGGTGGACATCGATATGAACGGCATAGGCGAACCGGTAAAAGTCTGGACAAAACCGAATACCGGAAAG
AAAGTGCCTGTAAGCTTCCCGCAGGGAGGCGATTCCTTTGATTCGCCCGAGCTGAACTTGCAGTGGCAGTTCAATCATAA
TCCTTCTGACGCCGACTGGAATCTGACGGAACGAAAAGGATGGTTACTGTTGAAAGCTCTGAAAGCGGATCATCTTCGGG
CATCACGCAATATGCTGACACAGAAGTGTATCGGATACGAGGGGACGGTTACGACAGAAATGGATATGAGTTCTTGGACC
GAGGGACAACGTGCCGGACTATTCTGTATAGGCAATTTGTTCAATGGCATTGGAATACTCAAAGAGAATGGCAAGAACTA
TCTGTATCTGGAGAATAATGGTAGTGTGGAGAAAGTAAAGCCGGTAAGCGGTAAGAAGATTTATTTCAGAGCAACGATGA
ATGCACGTACCAACCAGCATCAGTTGTACTATAGCACGGACAATAAGAACTTTACTCCTTGTGGAGAAGCTTATTCGCTG
AGATTCGGTGACTGGAAAGGTGCCCGTGTCGGTCTGTACTCATACAACACGCTTCGTGACGGAGGAAATGCTTTCTTCAA
CTGGTTCACTTACGACTTTAACTGA

Upstream 100 bases:

>100_bases
TGATACTGGTTGGCTGGCTGATCAGTATAGGCATGTTGTTTCTGGTCTTTCGTTCGGCATGTAGAAGATGAAGCTTGAGT
ATATACTTAAAACAATGATT

Downstream 100 bases:

>100_bases
TTTAGTTCGTTCACAACTTTAATTGATTCAGCCATCCACAATTTTAACGACTTGATTTATAAACCTTATTAAATGTATAT
CATGAAAGTGAGAATCCTTT

Product: putative beta-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MNTKILCVWIALLTCQIAGAQTKNVTWGDQGNGTYINPILNADYSDPDVIRVGDKYYMVNSDFHYMGMPVLESDDMINWK
IISQVYRRLDFPDWDTNGNYGGGSWAPSIRHHDGKFWIYFCTPREGLMMSTATDPHGPWSPLHCVKRIGGWEDPCPIWDD
NGQAYLGRSQLGAGPIILHKMSADGRTLEDDGHVIYTGPVAEGTKFHKRDGYYYISIPEGGVGEGWQTILRSKNIYGPYE
KKVVLEKGSTNVNGPHQGALVDTPEGEWWFYHFQLTEPLGRVVHLQPAHWKDGWPVIGVDIDMNGIGEPVKVWTKPNTGK
KVPVSFPQGGDSFDSPELNLQWQFNHNPSDADWNLTERKGWLLLKALKADHLRASRNMLTQKCIGYEGTVTTEMDMSSWT
EGQRAGLFCIGNLFNGIGILKENGKNYLYLENNGSVEKVKPVSGKKIYFRATMNARTNQHQLYYSTDNKNFTPCGEAYSL
RFGDWKGARVGLYSYNTLRDGGNAFFNWFTYDFN

Sequences:

>Translated_514_residues
MNTKILCVWIALLTCQIAGAQTKNVTWGDQGNGTYINPILNADYSDPDVIRVGDKYYMVNSDFHYMGMPVLESDDMINWK
IISQVYRRLDFPDWDTNGNYGGGSWAPSIRHHDGKFWIYFCTPREGLMMSTATDPHGPWSPLHCVKRIGGWEDPCPIWDD
NGQAYLGRSQLGAGPIILHKMSADGRTLEDDGHVIYTGPVAEGTKFHKRDGYYYISIPEGGVGEGWQTILRSKNIYGPYE
KKVVLEKGSTNVNGPHQGALVDTPEGEWWFYHFQLTEPLGRVVHLQPAHWKDGWPVIGVDIDMNGIGEPVKVWTKPNTGK
KVPVSFPQGGDSFDSPELNLQWQFNHNPSDADWNLTERKGWLLLKALKADHLRASRNMLTQKCIGYEGTVTTEMDMSSWT
EGQRAGLFCIGNLFNGIGILKENGKNYLYLENNGSVEKVKPVSGKKIYFRATMNARTNQHQLYYSTDNKNFTPCGEAYSL
RFGDWKGARVGLYSYNTLRDGGNAFFNWFTYDFN
>Mature_514_residues
MNTKILCVWIALLTCQIAGAQTKNVTWGDQGNGTYINPILNADYSDPDVIRVGDKYYMVNSDFHYMGMPVLESDDMINWK
IISQVYRRLDFPDWDTNGNYGGGSWAPSIRHHDGKFWIYFCTPREGLMMSTATDPHGPWSPLHCVKRIGGWEDPCPIWDD
NGQAYLGRSQLGAGPIILHKMSADGRTLEDDGHVIYTGPVAEGTKFHKRDGYYYISIPEGGVGEGWQTILRSKNIYGPYE
KKVVLEKGSTNVNGPHQGALVDTPEGEWWFYHFQLTEPLGRVVHLQPAHWKDGWPVIGVDIDMNGIGEPVKVWTKPNTGK
KVPVSFPQGGDSFDSPELNLQWQFNHNPSDADWNLTERKGWLLLKALKADHLRASRNMLTQKCIGYEGTVTTEMDMSSWT
EGQRAGLFCIGNLFNGIGILKENGKNYLYLENNGSVEKVKPVSGKKIYFRATMNARTNQHQLYYSTDNKNFTPCGEAYSL
RFGDWKGARVGLYSYNTLRDGGNAFFNWFTYDFN

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=540, Percent_Identity=26.1111111111111, Blast_Score=126, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 58156; Mature: 58156

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKILCVWIALLTCQIAGAQTKNVTWGDQGNGTYINPILNADYSDPDVIRVGDKYYMVN
CCCEEEEHHHHHHHHHCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCEEEECCEEEEEC
SDFHYMGMPVLESDDMINWKIISQVYRRLDFPDWDTNGNYGGGSWAPSIRHHDGKFWIYF
CCCEEECCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEE
CTPREGLMMSTATDPHGPWSPLHCVKRIGGWEDPCPIWDDNGQAYLGRSQLGAGPIILHK
ECCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECHHHCCCCCEEEEE
MSADGRTLEDDGHVIYTGPVAEGTKFHKRDGYYYISIPEGGVGEGWQTILRSKNIYGPYE
ECCCCCEECCCCCEEEECCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCC
KKVVLEKGSTNVNGPHQGALVDTPEGEWWFYHFQLTEPLGRVVHLQPAHWKDGWPVIGVD
CEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEECCCCCCCCCEEEEEE
IDMNGIGEPVKVWTKPNTGKKVPVSFPQGGDSFDSPELNLQWQFNHNPSDADWNLTERKG
EECCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCCC
WLLLKALKADHLRASRNMLTQKCIGYEGTVTTEMDMSSWTEGQRAGLFCIGNLFNGIGIL
EEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECHHCCEEEE
KENGKNYLYLENNGSVEKVKPVSGKKIYFRATMNARTNQHQLYYSTDNKNFTPCGEAYSL
EECCCEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEE
RFGDWKGARVGLYSYNTLRDGGNAFFNWFTYDFN
EECCCCCCEEEEEEECEECCCCCEEEEEEEEECC
>Mature Secondary Structure
MNTKILCVWIALLTCQIAGAQTKNVTWGDQGNGTYINPILNADYSDPDVIRVGDKYYMVN
CCCEEEEHHHHHHHHHCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCEEEECCEEEEEC
SDFHYMGMPVLESDDMINWKIISQVYRRLDFPDWDTNGNYGGGSWAPSIRHHDGKFWIYF
CCCEEECCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEE
CTPREGLMMSTATDPHGPWSPLHCVKRIGGWEDPCPIWDDNGQAYLGRSQLGAGPIILHK
ECCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECHHHCCCCCEEEEE
MSADGRTLEDDGHVIYTGPVAEGTKFHKRDGYYYISIPEGGVGEGWQTILRSKNIYGPYE
ECCCCCEECCCCCEEEECCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCC
KKVVLEKGSTNVNGPHQGALVDTPEGEWWFYHFQLTEPLGRVVHLQPAHWKDGWPVIGVD
CEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEECCCCCCCCCEEEEEE
IDMNGIGEPVKVWTKPNTGKKVPVSFPQGGDSFDSPELNLQWQFNHNPSDADWNLTERKG
EECCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCCC
WLLLKALKADHLRASRNMLTQKCIGYEGTVTTEMDMSSWTEGQRAGLFCIGNLFNGIGIL
EEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECHHCCEEEE
KENGKNYLYLENNGSVEKVKPVSGKKIYFRATMNARTNQHQLYYSTDNKNFTPCGEAYSL
EECCCEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEE
RFGDWKGARVGLYSYNTLRDGGNAFFNWFTYDFN
EECCCCCCEEEEEEECEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA