| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29348172
Identifier: 29348172
GI number: 29348172
Start: 3423675
End: 3424892
Strand: Reverse
Name: 29348172
Synonym: BT_2763
Alternate gene names: NA
Gene position: 3424892-3423675 (Counterclockwise)
Preceding gene: 29348173
Following gene: 29348171
Centisome position: 54.71
GC content: 45.24
Gene sequence:
>1218_bases ATGGATAGAAACAGTGAAGAGTATCAGCAGATGCGTGACAAAGCGTTATCTCAACTGCGTAGTGGCGAATCGCTCACGGG CAAAGACGGAGCCTTTGGTCCGTTGCTAAAAGAGTTTTTAGAGGCCGCTTTAGATGGCGAGATGTCCTCCCACCTTGATG ATTCAGAGCGTCTTAAAGGCAATAAGCGGAATGGTCGTGGCAGCAAACGTGTCAAAACCATGGCCGGCGAGATTGATATC GTGACTCCTCAAGATCGTCACAGCAGCTTTAGTCCTGAGATCCTTAAAAAGCGCGAGACGATTCTTGCGGACAACATGTC TTCCAAGATTATCAGTCTGTATGGTATGGGTTTGAGCCTTAGGGATATTTCCTCCCATATCGAGGAGATGTATGATGTTG AGATCTCCCACAACACCCTAAGTGAGATTATTGAACGCATAGTTCCCAAGGTGAAGGAGTGGCAAAGCCGCCCCCTGGAA TCAATGTATACCATTGTGTGGCTTGACGCAATGCACTACAAGGTGAAGGATGGTGGTCGTACCGAAAGTCGAGCTGTCTA TAATGTTCTGGCAGTCAATAAAGATGGCCATAAAGAACTGATAGGCATGTATGTATCAGAAAGCGAAGGGGCTAATTTCT GGCTGAGTGTCTTGACCGACCTGAAAGCACGTGGCATGAAAGATGTTCTGATCGCTTGCATTGACAATCTCACGGGATTT GCTGAAGCAATCAGCACTATTTTTCCTGAGGTAATCATCCAGAACTGCGTCATACATCAGATTCGCAATTCATTGAAATA CATAGCCTCAAAAGATCAAAAAGAGTTTATGGCAGATTTGAAAACAGTCTATCAAGCCCCTAATAAAGATTTAGCAGAGC TCAACCTTGATAAACTACAAGATAAATGGGGTAAAAAATACCCTGTTGTCTTGGAATCATGGCGACGAAACTGGGATAAT CTATCGGCCTATTTTGCTTATGATGAGCATATCCGAAGACTGATTTACACAACTAACGCCGTCGAGGGCTTCCACCGTCA AGTACGAAAGGTGACCAAAACCAAGGGTGTCTTTCCCAATGACATGGCATTGATGAAGTTGATCTACCTGGCTGTGATGA ACATCTCCAAGAAATGGACGCAACCGCTCCAGAATTGGGCGTTAACTGCCGGGCAACTACGAATCAAGTTTGGAGAGAGA ATGCCTCTGGCGATATAA
Upstream 100 bases:
>100_bases ATATAAGCGGACACATAGGAATCTTTTCTGTGAAGAAACAAAATATATGCCTAAAGAGGGCGTAATCTGAACTCTGTCCC CAAACAATTATCTTTGTATT
Downstream 100 bases:
>100_bases CCCATTTCCCCTTTTTTGCTTTTCAAACGCAAAGAAAAGGTAGTTCCCGGATGTGAGCAAGGGTATATAAACGGCTCATT CTTCGCCGCCCTTGCACACA
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MDRNSEEYQQMRDKALSQLRSGESLTGKDGAFGPLLKEFLEAALDGEMSSHLDDSERLKGNKRNGRGSKRVKTMAGEIDI VTPQDRHSSFSPEILKKRETILADNMSSKIISLYGMGLSLRDISSHIEEMYDVEISHNTLSEIIERIVPKVKEWQSRPLE SMYTIVWLDAMHYKVKDGGRTESRAVYNVLAVNKDGHKELIGMYVSESEGANFWLSVLTDLKARGMKDVLIACIDNLTGF AEAISTIFPEVIIQNCVIHQIRNSLKYIASKDQKEFMADLKTVYQAPNKDLAELNLDKLQDKWGKKYPVVLESWRRNWDN LSAYFAYDEHIRRLIYTTNAVEGFHRQVRKVTKTKGVFPNDMALMKLIYLAVMNISKKWTQPLQNWALTAGQLRIKFGER MPLAI
Sequences:
>Translated_405_residues MDRNSEEYQQMRDKALSQLRSGESLTGKDGAFGPLLKEFLEAALDGEMSSHLDDSERLKGNKRNGRGSKRVKTMAGEIDI VTPQDRHSSFSPEILKKRETILADNMSSKIISLYGMGLSLRDISSHIEEMYDVEISHNTLSEIIERIVPKVKEWQSRPLE SMYTIVWLDAMHYKVKDGGRTESRAVYNVLAVNKDGHKELIGMYVSESEGANFWLSVLTDLKARGMKDVLIACIDNLTGF AEAISTIFPEVIIQNCVIHQIRNSLKYIASKDQKEFMADLKTVYQAPNKDLAELNLDKLQDKWGKKYPVVLESWRRNWDN LSAYFAYDEHIRRLIYTTNAVEGFHRQVRKVTKTKGVFPNDMALMKLIYLAVMNISKKWTQPLQNWALTAGQLRIKFGER MPLAI >Mature_405_residues MDRNSEEYQQMRDKALSQLRSGESLTGKDGAFGPLLKEFLEAALDGEMSSHLDDSERLKGNKRNGRGSKRVKTMAGEIDI VTPQDRHSSFSPEILKKRETILADNMSSKIISLYGMGLSLRDISSHIEEMYDVEISHNTLSEIIERIVPKVKEWQSRPLE SMYTIVWLDAMHYKVKDGGRTESRAVYNVLAVNKDGHKELIGMYVSESEGANFWLSVLTDLKARGMKDVLIACIDNLTGF AEAISTIFPEVIIQNCVIHQIRNSLKYIASKDQKEFMADLKTVYQAPNKDLAELNLDKLQDKWGKKYPVVLESWRRNWDN LSAYFAYDEHIRRLIYTTNAVEGFHRQVRKVTKTKGVFPNDMALMKLIYLAVMNISKKWTQPLQNWALTAGQLRIKFGER MPLAI
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 46376; Mature: 46376
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRNSEEYQQMRDKALSQLRSGESLTGKDGAFGPLLKEFLEAALDGEMSSHLDDSERLKG CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCHHHHCC NKRNGRGSKRVKTMAGEIDIVTPQDRHSSFSPEILKKRETILADNMSSKIISLYGMGLSL CCCCCCCHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHH RDISSHIEEMYDVEISHNTLSEIIERIVPKVKEWQSRPLESMYTIVWLDAMHYKVKDGGR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCC TESRAVYNVLAVNKDGHKELIGMYVSESEGANFWLSVLTDLKARGMKDVLIACIDNLTGF CHHHHHHHHEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH AEAISTIFPEVIIQNCVIHQIRNSLKYIASKDQKEFMADLKTVYQAPNKDLAELNLDKLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHH DKWGKKYPVVLESWRRNWDNLSAYFAYDEHIRRLIYTTNAVEGFHRQVRKVTKTKGVFPN HHHCCCCCHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DMALMKLIYLAVMNISKKWTQPLQNWALTAGQLRIKFGERMPLAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC >Mature Secondary Structure MDRNSEEYQQMRDKALSQLRSGESLTGKDGAFGPLLKEFLEAALDGEMSSHLDDSERLKG CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCHHHHCC NKRNGRGSKRVKTMAGEIDIVTPQDRHSSFSPEILKKRETILADNMSSKIISLYGMGLSL CCCCCCCHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHH RDISSHIEEMYDVEISHNTLSEIIERIVPKVKEWQSRPLESMYTIVWLDAMHYKVKDGGR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCC TESRAVYNVLAVNKDGHKELIGMYVSESEGANFWLSVLTDLKARGMKDVLIACIDNLTGF CHHHHHHHHEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH AEAISTIFPEVIIQNCVIHQIRNSLKYIASKDQKEFMADLKTVYQAPNKDLAELNLDKLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHH DKWGKKYPVVLESWRRNWDNLSAYFAYDEHIRRLIYTTNAVEGFHRQVRKVTKTKGVFPN HHHCCCCCHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DMALMKLIYLAVMNISKKWTQPLQNWALTAGQLRIKFGERMPLAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1849509; 1327271; 11481430; 11481432 [H]