| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is gltX [H]
Identifier: 29348157
GI number: 29348157
Start: 3404799
End: 3406313
Strand: Reverse
Name: gltX [H]
Synonym: BT_2748
Alternate gene names: 29348157
Gene position: 3406313-3404799 (Counterclockwise)
Preceding gene: 29348159
Following gene: 29348156
Centisome position: 54.41
GC content: 46.6
Gene sequence:
>1515_bases ATGGCAGAAAGAAAAGTAAGAGTTCGTTTTGCTCCGAGTCCTACGGGAGCATTGCACATCGGTGGTGTGCGTACAGCTTT GTATAATTATCTATTTGCGCGTCAACACGGCGGAGACCTCATTTTCCGTATTGAAGATACTGACTCCAACCGGTTCGTGC CGGGAGCGGAAGAGTATATACTTGAGTCATTCAAGTGGTTGGGTATCCACTTTGACGAAGGAGTGAGCTTCGGTGGAGAA CACGGCCCGTACCGTCAGTCCGAACGTCGCGAAATCTATAAGAAATACGTGCAGATTTTGTTGGATAATGACAAGGCATA CATCGCTTTTGATACTCCCGAGGAACTGGACGCTAAGCGTGCGGAAATTGCTAACTTCCAATATGATGCATCGACCCGCG GGATGATGCGTAATTCTCTGACAATGTCGAAAGAAGAAGTGGACGCATTGATTGCTGAAGGAAAGCAATATGTGGTTCGC TTTAAGATCGAGCCGAACGAGGATGTTCACGTGAATGACTTGATTCGTGGCGAAGTCGTTATTAATTCATCTATTCTGGA TGACAAGGTGCTTTATAAGTCGGCTGACGAACTGCCTACTTATCATCTCGCAAACATTGTGGATGACCATTTGATGGAAG TGTCTCATGTAATCCGTGGCGAAGAATGGTTGCCTTCGGCACCGCTGCACGTACTTTTGTACCGTGCATTCGGCTGGGAA GACACGATGCCGGAATTTGCCCACTTGCCTTTGCTGTTGAAGCCGGAAGGAAACGGTAAACTAAGCAAGCGTGACGGCGA CCGTTTGGGATTCCCTGTATTCCCGTTGGAATGGCGTCCGGAATCGGGAGAAGTGTCTTCCGGATATCGTGAATCGGGTT ATTTGCCCGAAGCGGTGATTAACTTCCTGGCTTTGTTGGGATGGAATCCGGGCAACGATCAGGAAGTGATGTCTATGGAC GAGATGATAAAACTGTTCGACATTCATCGTTGCAGCAAGTCCGGAGCTAAATTCGACTATAAAAAAGGTATTTGGTTCAA TCATCAGTATATCCAGCTTAAACCGAATGAAGAAATTGCCGAACTGTTTTTGCCTGTGTTGAAAGAGCATGGGGTAGAGG CTCCTTTCGAGAAGGTCGTTACGGTAGTCGGCATGATGAAAGACCGTGTAAGTTTTATCAAGGAACTGTGGGATGTATGT AGTTTCTTCTTTGTGGCTCCTGCTGAATATGACGAAAAGACAGTGAAGAAACGCTGGAAAGAAGACTCGGCAAAATGTAT GACTGAGTTGGCGGAAGTAATTGCCGGCATCGAGGATTTCAGCATTGAAGGTCAGGAGAAAGTAGTGATGGACTGGATTG CTGAAAAAGGTTACCATACAGGTAATATAATGAATGCTTTCCGTCTGACACTGGTAGGCGAAGGTAAAGGTCCGCATATG TTCGATATTTCCTGGGTGTTGGGCAAGGAAGAGACATTGGCTCGTATGAAGCGCGCCGTAGAGGTACTTAAATAA
Upstream 100 bases:
>100_bases TTCCATACGCATTGAAATTTTTGCGAAAAGTACAAAAAAAAACAATAGTGTGGAAAAAAAGGTTTAATTTTGCCACGATT TACCTATACTAACCCAAATT
Downstream 100 bases:
>100_bases TTAGGATTTGTAAATTATGCTTTACAATCTGGCAATAGTTATTTATGACCTTTTGGTTCATTTTGCTGCTCCGTTCAGCC GTAAGCCCCGAAAAATGATG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 504; Mature: 503
Protein sequence:
>504_residues MAERKVRVRFAPSPTGALHIGGVRTALYNYLFARQHGGDLIFRIEDTDSNRFVPGAEEYILESFKWLGIHFDEGVSFGGE HGPYRQSERREIYKKYVQILLDNDKAYIAFDTPEELDAKRAEIANFQYDASTRGMMRNSLTMSKEEVDALIAEGKQYVVR FKIEPNEDVHVNDLIRGEVVINSSILDDKVLYKSADELPTYHLANIVDDHLMEVSHVIRGEEWLPSAPLHVLLYRAFGWE DTMPEFAHLPLLLKPEGNGKLSKRDGDRLGFPVFPLEWRPESGEVSSGYRESGYLPEAVINFLALLGWNPGNDQEVMSMD EMIKLFDIHRCSKSGAKFDYKKGIWFNHQYIQLKPNEEIAELFLPVLKEHGVEAPFEKVVTVVGMMKDRVSFIKELWDVC SFFFVAPAEYDEKTVKKRWKEDSAKCMTELAEVIAGIEDFSIEGQEKVVMDWIAEKGYHTGNIMNAFRLTLVGEGKGPHM FDISWVLGKEETLARMKRAVEVLK
Sequences:
>Translated_504_residues MAERKVRVRFAPSPTGALHIGGVRTALYNYLFARQHGGDLIFRIEDTDSNRFVPGAEEYILESFKWLGIHFDEGVSFGGE HGPYRQSERREIYKKYVQILLDNDKAYIAFDTPEELDAKRAEIANFQYDASTRGMMRNSLTMSKEEVDALIAEGKQYVVR FKIEPNEDVHVNDLIRGEVVINSSILDDKVLYKSADELPTYHLANIVDDHLMEVSHVIRGEEWLPSAPLHVLLYRAFGWE DTMPEFAHLPLLLKPEGNGKLSKRDGDRLGFPVFPLEWRPESGEVSSGYRESGYLPEAVINFLALLGWNPGNDQEVMSMD EMIKLFDIHRCSKSGAKFDYKKGIWFNHQYIQLKPNEEIAELFLPVLKEHGVEAPFEKVVTVVGMMKDRVSFIKELWDVC SFFFVAPAEYDEKTVKKRWKEDSAKCMTELAEVIAGIEDFSIEGQEKVVMDWIAEKGYHTGNIMNAFRLTLVGEGKGPHM FDISWVLGKEETLARMKRAVEVLK >Mature_503_residues AERKVRVRFAPSPTGALHIGGVRTALYNYLFARQHGGDLIFRIEDTDSNRFVPGAEEYILESFKWLGIHFDEGVSFGGEH GPYRQSERREIYKKYVQILLDNDKAYIAFDTPEELDAKRAEIANFQYDASTRGMMRNSLTMSKEEVDALIAEGKQYVVRF KIEPNEDVHVNDLIRGEVVINSSILDDKVLYKSADELPTYHLANIVDDHLMEVSHVIRGEEWLPSAPLHVLLYRAFGWED TMPEFAHLPLLLKPEGNGKLSKRDGDRLGFPVFPLEWRPESGEVSSGYRESGYLPEAVINFLALLGWNPGNDQEVMSMDE MIKLFDIHRCSKSGAKFDYKKGIWFNHQYIQLKPNEEIAELFLPVLKEHGVEAPFEKVVTVVGMMKDRVSFIKELWDVCS FFFVAPAEYDEKTVKKRWKEDSAKCMTELAEVIAGIEDFSIEGQEKVVMDWIAEKGYHTGNIMNAFRLTLVGEGKGPHMF DISWVLGKEETLARMKRAVEVLK
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=519, Percent_Identity=34.2967244701349, Blast_Score=251, Evalue=1e-66, Organism=Escherichia coli, GI1788743, Length=500, Percent_Identity=31.6, Blast_Score=255, Evalue=5e-69, Organism=Escherichia coli, GI226510925, Length=267, Percent_Identity=31.0861423220974, Blast_Score=113, Evalue=3e-26, Organism=Caenorhabditis elegans, GI71993394, Length=518, Percent_Identity=34.5559845559846, Blast_Score=247, Evalue=1e-65, Organism=Saccharomyces cerevisiae, GI6324540, Length=518, Percent_Identity=36.6795366795367, Blast_Score=296, Evalue=5e-81, Organism=Saccharomyces cerevisiae, GI6321192, Length=220, Percent_Identity=29.5454545454545, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24665321, Length=518, Percent_Identity=36.1003861003861, Blast_Score=297, Evalue=1e-80,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 57735; Mature: 57603
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAERKVRVRFAPSPTGALHIGGVRTALYNYLFARQHGGDLIFRIEDTDSNRFVPGAEEYI CCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHH LESFKWLGIHFDEGVSFGGEHGPYRQSERREIYKKYVQILLDNDKAYIAFDTPEELDAKR HHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCEEEEECCCHHHHHHH AEIANFQYDASTRGMMRNSLTMSKEEVDALIAEGKQYVVRFKIEPNEDVHVNDLIRGEVV HHHCCCEECCCHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCHHHEEECEEE INSSILDDKVLYKSADELPTYHLANIVDDHLMEVSHVIRGEEWLPSAPLHVLLYRAFGWE EECCCCCCHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC DTMPEFAHLPLLLKPEGNGKLSKRDGDRLGFPVFPLEWRPESGEVSSGYRESGYLPEAVI CCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHH NFLALLGWNPGNDQEVMSMDEMIKLFDIHRCSKSGAKFDYKKGIWFNHQYIQLKPNEEIA HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEEEECCCHHHH ELFLPVLKEHGVEAPFEKVVTVVGMMKDRVSFIKELWDVCSFFFVAPAEYDEKTVKKRWK HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHH EDSAKCMTELAEVIAGIEDFSIEGQEKVVMDWIAEKGYHTGNIMNAFRLTLVGEGKGPHM HHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCCCCCCCHHEEEEEEEEECCCCCEE FDISWVLGKEETLARMKRAVEVLK EEEEEECCCHHHHHHHHHHHHHHC >Mature Secondary Structure AERKVRVRFAPSPTGALHIGGVRTALYNYLFARQHGGDLIFRIEDTDSNRFVPGAEEYI CCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHH LESFKWLGIHFDEGVSFGGEHGPYRQSERREIYKKYVQILLDNDKAYIAFDTPEELDAKR HHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCEEEEECCCHHHHHHH AEIANFQYDASTRGMMRNSLTMSKEEVDALIAEGKQYVVRFKIEPNEDVHVNDLIRGEVV HHHCCCEECCCHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCHHHEEECEEE INSSILDDKVLYKSADELPTYHLANIVDDHLMEVSHVIRGEEWLPSAPLHVLLYRAFGWE EECCCCCCHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC DTMPEFAHLPLLLKPEGNGKLSKRDGDRLGFPVFPLEWRPESGEVSSGYRESGYLPEAVI CCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHH NFLALLGWNPGNDQEVMSMDEMIKLFDIHRCSKSGAKFDYKKGIWFNHQYIQLKPNEEIA HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEEEECCCHHHH ELFLPVLKEHGVEAPFEKVVTVVGMMKDRVSFIKELWDVCSFFFVAPAEYDEKTVKKRWK HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHH EDSAKCMTELAEVIAGIEDFSIEGQEKVVMDWIAEKGYHTGNIMNAFRLTLVGEGKGPHM HHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCCCCCCCHHEEEEEEEEECCCCCEE FDISWVLGKEETLARMKRAVEVLK EEEEEECCCHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA