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The map label for this gene is ydcP [H]

Identifier: 29347822

GI number: 29347822

Start: 3012386

End: 3014215

Strand: Reverse

Name: ydcP [H]

Synonym: BT_2412

Alternate gene names: 29347822

Gene position: 3014215-3012386 (Counterclockwise)

Preceding gene: 29347823

Following gene: 29347821

Centisome position: 48.15

GC content: 48.25

Gene sequence:

>1830_bases
ATGATCAAGCAGCGTAAAATAGAACTTCTCGCCCCGGCGAAGAATCTGGAATGTGGTATCGAAGCTATCAATCACGGAGC
AGATGCCGTATATATCGGTGCACCTAAATTTGGCGCCCGTGCAGCGGCTGTGAATTCTTTGGAAGATATCGAAGCGTTGG
TAAAACATGCTCACTTGTATAATGCCCGTATCTATGTCACAGTCAATACGATTCTGAAAGAAGAAGAGTTGAAAGAGACG
GAGGAGATGATCCATGCCCTGTATCGGGTTGGCGTGGATGCCCTGATTGTGCAGGATATGGGAATCACGAAACTGAATCT
TCCGCCGATACCTCTTCATGCCAGTACGCAGATGGACAATCGGACACCGGAAAAGGTGAAGTTCCTTTGGGAAGCGGGTT
TCCGTCAGGTTGTTCTGGCACGGGAACTGTCGATTCGTGAAATAAGGAAGATACACGAAATTTGTCCCGAAGTTCCGCTG
GAAGTATTTGTACACGGGGCGCTTTGCGTAAGCTATAGCGGTCAGTGCTACGTTAGTCAGGCTTGTTTCGGGCGCAGTGC
GAATCGGGGAGAGTGTGCGCAGTTTTGCCGCTTGCCTTTCAGTCTTGTCGATTCGGAAGGAAAAGTGATTGTGAAAGACA
AGCACTTGCTCTCTTTGAAAGATATGAATCAGAGTGATGAACTGGAACGGTTGCTGGATGCCGGAGCTTCCTCATTCAAA
ATAGAAGGACGTCTGAAAGATGTGTCTTATGTGAAGAATGTAACGGCTGCCTATCGTCAGAAACTAGATGCTATCTTTGC
CCGCCGACCGGAATATGTGCGCGCTTCTTCCGGCACTTGCCGTTTCGATTTTAAACCGCAGCTGGACAAGAGTTTCAGTC
GTGGATTTACTCATTACTTCCTGCATGGACGCAGTGAGGATATTTTTTCTTTTGATACTCCGAAATCATTGGGAGAGGAG
ATGGGTACAATGAAAGAAGCCCGTGGCAACTTTCTGACCGTTGCCGGACTGAAATCATTTAATAACGGAGACGGTGTCTG
CTATATTGATGAACAGGGACGTTTGCAGGGATTCCGGATTAATCGGGTGGATGGAAACAAACTTTATCCTCAGGAAATGC
CCCGCATCAAGCCCCGTACCAAGCTCTATCGCAACTTCGATCAGGAGTTTGAACGCATACTTTCCCGCAAGTCGGCCGAA
CGGAAGATTGCCGTTAACATACTGCTTGCAGACAACAACTTCGGTTTCTCTCTGACACTGACGGATGAGGACGATAACAG
CGTTACGCTCACTCTGCCTCGTGAGAAAGAGCCGGCTCGGACTCCACAGGCTGATAACTTGAAGACGCAGCTTGCTAAAT
TGGGAAACACGCCTTTCGAAGCGGAAAAGATCGAAATCTCCTTCTCGGAGAATTGGTTCTTACCGGCTTCTGTTTTGGCG
GATTTCCGTCGTCAGGCGATAGAAAAGCTGATTGCTGTCCGACGTATCAATTATCGTCAGGAACTGGCTGTCTGGAAGCC
GACTTCACATGATTATCCGCAGGCTGCACTTACTTATTTGGGAAACGTGATGAACACCCGTGCAGCTTCTTTTTATCGGG
AACATGGAGTGCAGCAAGTGGCTGAGGCTTATGAAAAGGAACGGGTGGAAGATGCCGTGCTGATGTTCTGCAAACACTGC
CTGCGTTATAGCATGGGCTGGTGCCCTATCCATCAGCGAGTGCGCTCGCCTTATAAAGAGCCCTATTATCTGGTATCGAA
TGACGGAAAACGTTTCCGCCTTGAATTCGATTGCAAAAACTGTCAAATGAAAGTAAAAGCGGCACAATGA

Upstream 100 bases:

>100_bases
GTCCGTTGGTCCGTTGGCGCGCTCATGCCAACCTTTTGTTCTCCAACTGGCTGAACTACTTTGTTTATCAGGAAACGCCT
TACAACATTAATGATATTGA

Downstream 100 bases:

>100_bases
AACGATTCCCCGGCAGAGATATGCGGAGTTTAACGGAGCTTGTTCTCGGCAGAGATAAGTTTCGTACAGCTTTGTGCTGT
TCTGTCGTGGGGATGTTGCT

Product: putative collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MIKQRKIELLAPAKNLECGIEAINHGADAVYIGAPKFGARAAAVNSLEDIEALVKHAHLYNARIYVTVNTILKEEELKET
EEMIHALYRVGVDALIVQDMGITKLNLPPIPLHASTQMDNRTPEKVKFLWEAGFRQVVLARELSIREIRKIHEICPEVPL
EVFVHGALCVSYSGQCYVSQACFGRSANRGECAQFCRLPFSLVDSEGKVIVKDKHLLSLKDMNQSDELERLLDAGASSFK
IEGRLKDVSYVKNVTAAYRQKLDAIFARRPEYVRASSGTCRFDFKPQLDKSFSRGFTHYFLHGRSEDIFSFDTPKSLGEE
MGTMKEARGNFLTVAGLKSFNNGDGVCYIDEQGRLQGFRINRVDGNKLYPQEMPRIKPRTKLYRNFDQEFERILSRKSAE
RKIAVNILLADNNFGFSLTLTDEDDNSVTLTLPREKEPARTPQADNLKTQLAKLGNTPFEAEKIEISFSENWFLPASVLA
DFRRQAIEKLIAVRRINYRQELAVWKPTSHDYPQAALTYLGNVMNTRAASFYREHGVQQVAEAYEKERVEDAVLMFCKHC
LRYSMGWCPIHQRVRSPYKEPYYLVSNDGKRFRLEFDCKNCQMKVKAAQ

Sequences:

>Translated_609_residues
MIKQRKIELLAPAKNLECGIEAINHGADAVYIGAPKFGARAAAVNSLEDIEALVKHAHLYNARIYVTVNTILKEEELKET
EEMIHALYRVGVDALIVQDMGITKLNLPPIPLHASTQMDNRTPEKVKFLWEAGFRQVVLARELSIREIRKIHEICPEVPL
EVFVHGALCVSYSGQCYVSQACFGRSANRGECAQFCRLPFSLVDSEGKVIVKDKHLLSLKDMNQSDELERLLDAGASSFK
IEGRLKDVSYVKNVTAAYRQKLDAIFARRPEYVRASSGTCRFDFKPQLDKSFSRGFTHYFLHGRSEDIFSFDTPKSLGEE
MGTMKEARGNFLTVAGLKSFNNGDGVCYIDEQGRLQGFRINRVDGNKLYPQEMPRIKPRTKLYRNFDQEFERILSRKSAE
RKIAVNILLADNNFGFSLTLTDEDDNSVTLTLPREKEPARTPQADNLKTQLAKLGNTPFEAEKIEISFSENWFLPASVLA
DFRRQAIEKLIAVRRINYRQELAVWKPTSHDYPQAALTYLGNVMNTRAASFYREHGVQQVAEAYEKERVEDAVLMFCKHC
LRYSMGWCPIHQRVRSPYKEPYYLVSNDGKRFRLEFDCKNCQMKVKAAQ
>Mature_609_residues
MIKQRKIELLAPAKNLECGIEAINHGADAVYIGAPKFGARAAAVNSLEDIEALVKHAHLYNARIYVTVNTILKEEELKET
EEMIHALYRVGVDALIVQDMGITKLNLPPIPLHASTQMDNRTPEKVKFLWEAGFRQVVLARELSIREIRKIHEICPEVPL
EVFVHGALCVSYSGQCYVSQACFGRSANRGECAQFCRLPFSLVDSEGKVIVKDKHLLSLKDMNQSDELERLLDAGASSFK
IEGRLKDVSYVKNVTAAYRQKLDAIFARRPEYVRASSGTCRFDFKPQLDKSFSRGFTHYFLHGRSEDIFSFDTPKSLGEE
MGTMKEARGNFLTVAGLKSFNNGDGVCYIDEQGRLQGFRINRVDGNKLYPQEMPRIKPRTKLYRNFDQEFERILSRKSAE
RKIAVNILLADNNFGFSLTLTDEDDNSVTLTLPREKEPARTPQADNLKTQLAKLGNTPFEAEKIEISFSENWFLPASVLA
DFRRQAIEKLIAVRRINYRQELAVWKPTSHDYPQAALTYLGNVMNTRAASFYREHGVQQVAEAYEKERVEDAVLMFCKHC
LRYSMGWCPIHQRVRSPYKEPYYLVSNDGKRFRLEFDCKNCQMKVKAAQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=622, Percent_Identity=45.9807073954984, Blast_Score=526, Evalue=1e-150,
Organism=Escherichia coli, GI1788397, Length=410, Percent_Identity=28.780487804878, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI1789548, Length=294, Percent_Identity=30.6122448979592, Blast_Score=109, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 69531; Mature: 69531

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKQRKIELLAPAKNLECGIEAINHGADAVYIGAPKFGARAAAVNSLEDIEALVKHAHLY
CCCCCCEEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
NARIYVTVNTILKEEELKETEEMIHALYRVGVDALIVQDMGITKLNLPPIPLHASTQMDN
CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEECCCCCCCCCCCCCCC
RTPEKVKFLWEAGFRQVVLARELSIREIRKIHEICPEVPLEVFVHGALCVSYSGQCYVSQ
CCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHEEHEEEEECCCCEEEEH
ACFGRSANRGECAQFCRLPFSLVDSEGKVIVKDKHLLSLKDMNQSDELERLLDAGASSFK
HHCCCCCCCCHHHHHHCCCHHHCCCCCCEEEECCCEEEECCCCCHHHHHHHHHCCCCCEE
IEGRLKDVSYVKNVTAAYRQKLDAIFARRPEYVRASSGTCRFDFKPQLDKSFSRGFTHYF
EECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCHHHHHHCCCEEEE
LHGRSEDIFSFDTPKSLGEEMGTMKEARGNFLTVAGLKSFNNGDGVCYIDEQGRLQGFRI
EECCCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCEECEEE
NRVDGNKLYPQEMPRIKPRTKLYRNFDQEFERILSRKSAERKIAVNILLADNNFGFSLTL
EECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEE
TDEDDNSVTLTLPREKEPARTPQADNLKTQLAKLGNTPFEAEKIEISFSENWFLPASVLA
ECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHH
DFRRQAIEKLIAVRRINYRQELAVWKPTSHDYPQAALTYLGNVMNTRAASFYREHGVQQV
HHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEAYEKERVEDAVLMFCKHCLRYSMGWCPIHQRVRSPYKEPYYLVSNDGKRFRLEFDCKN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEECCC
CQMKVKAAQ
CEEEEEECC
>Mature Secondary Structure
MIKQRKIELLAPAKNLECGIEAINHGADAVYIGAPKFGARAAAVNSLEDIEALVKHAHLY
CCCCCCEEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
NARIYVTVNTILKEEELKETEEMIHALYRVGVDALIVQDMGITKLNLPPIPLHASTQMDN
CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEECCCCCCCCCCCCCCC
RTPEKVKFLWEAGFRQVVLARELSIREIRKIHEICPEVPLEVFVHGALCVSYSGQCYVSQ
CCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHEEHEEEEECCCCEEEEH
ACFGRSANRGECAQFCRLPFSLVDSEGKVIVKDKHLLSLKDMNQSDELERLLDAGASSFK
HHCCCCCCCCHHHHHHCCCHHHCCCCCCEEEECCCEEEECCCCCHHHHHHHHHCCCCCEE
IEGRLKDVSYVKNVTAAYRQKLDAIFARRPEYVRASSGTCRFDFKPQLDKSFSRGFTHYF
EECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCHHHHHHCCCEEEE
LHGRSEDIFSFDTPKSLGEEMGTMKEARGNFLTVAGLKSFNNGDGVCYIDEQGRLQGFRI
EECCCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCEECEEE
NRVDGNKLYPQEMPRIKPRTKLYRNFDQEFERILSRKSAERKIAVNILLADNNFGFSLTL
EECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEE
TDEDDNSVTLTLPREKEPARTPQADNLKTQLAKLGNTPFEAEKIEISFSENWFLPASVLA
ECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHH
DFRRQAIEKLIAVRRINYRQELAVWKPTSHDYPQAALTYLGNVMNTRAASFYREHGVQQV
HHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEAYEKERVEDAVLMFCKHCLRYSMGWCPIHQRVRSPYKEPYYLVSNDGKRFRLEFDCKN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEECCC
CQMKVKAAQ
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]