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The map label for this gene is ybdM [H]

Identifier: 29347720

GI number: 29347720

Start: 2884699

End: 2885211

Strand: Reverse

Name: ybdM [H]

Synonym: BT_2310

Alternate gene names: 29347720

Gene position: 2885211-2884699 (Counterclockwise)

Preceding gene: 29347721

Following gene: 29347719

Centisome position: 46.09

GC content: 52.63

Gene sequence:

>513_bases
ATGGACAATGAATTTACCAGTCCCGTGTATGGCGTCAAGGCTGTACCGGTGGAAAGGATCAGGGCGAATTCCTATAATCC
CAACGTGACGGCCCCTCCTGAGATGCGGCTTTTGGAACTCTCGATTTGGGAGGATGGGTACACGATGCCGTGCGTGTGTT
ATTACATTGAGAAAGAGGATGTGTACGAGCTTGTGGACGGCTATCACAGGTATAAGGTCATGATGACCTCGCCCAGAATA
TACAAGCGGGAGAACGGACTGTTACCCGTTACCGTCATCCGTAAGGATCTGGCCGAGCGTATGGCCTCTACCATCCGCCA
TAACCGTGCCCGTGGAATGCATAAGATCGAGCTTATGACACGGCTTGTCGGGGAACTTACGAGGTCGGGCATGTCGGATT
CGTGGATACGCAGGAACCTGGGTATGGACAAGGATGAGTTGCTGCGCCTGAAGCAGATATCGGGACTGGCGGAGCTTTTT
GCGGATAAGGAATTCCGTAAGGCCGTAGAATAG

Upstream 100 bases:

>100_bases
CACTGTTGCAAGTACATGGGCTTTTCACCAAATAAACAGGAACAGGAAAGAAGACGGAAGATGATGGATGAATATAGATC
TTATTTTAATGAATGAAAAG

Downstream 100 bases:

>100_bases
GATGTTTGGCATAAAACCGAAAATTCGTATGCTCGGAGTATTCGGGAAATAAGAAAAAATGTAAAAATATTATAAAATGT
GCAAGATGGAGATAACAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MDNEFTSPVYGVKAVPVERIRANSYNPNVTAPPEMRLLELSIWEDGYTMPCVCYYIEKEDVYELVDGYHRYKVMMTSPRI
YKRENGLLPVTVIRKDLAERMASTIRHNRARGMHKIELMTRLVGELTRSGMSDSWIRRNLGMDKDELLRLKQISGLAELF
ADKEFRKAVE

Sequences:

>Translated_170_residues
MDNEFTSPVYGVKAVPVERIRANSYNPNVTAPPEMRLLELSIWEDGYTMPCVCYYIEKEDVYELVDGYHRYKVMMTSPRI
YKRENGLLPVTVIRKDLAERMASTIRHNRARGMHKIELMTRLVGELTRSGMSDSWIRRNLGMDKDELLRLKQISGLAELF
ADKEFRKAVE
>Mature_170_residues
MDNEFTSPVYGVKAVPVERIRANSYNPNVTAPPEMRLLELSIWEDGYTMPCVCYYIEKEDVYELVDGYHRYKVMMTSPRI
YKRENGLLPVTVIRKDLAERMASTIRHNRARGMHKIELMTRLVGELTRSGMSDSWIRRNLGMDKDELLRLKQISGLAELF
ADKEFRKAVE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=161, Percent_Identity=47.2049689440994, Blast_Score=149, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 19836; Mature: 19836

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNEFTSPVYGVKAVPVERIRANSYNPNVTAPPEMRLLELSIWEDGYTMPCVCYYIEKED
CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECHHH
VYELVDGYHRYKVMMTSPRIYKRENGLLPVTVIRKDLAERMASTIRHNRARGMHKIELMT
HHHHHCCHHHEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RLVGELTRSGMSDSWIRRNLGMDKDELLRLKQISGLAELFADKEFRKAVE
HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCC
>Mature Secondary Structure
MDNEFTSPVYGVKAVPVERIRANSYNPNVTAPPEMRLLELSIWEDGYTMPCVCYYIEKED
CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECHHH
VYELVDGYHRYKVMMTSPRIYKRENGLLPVTVIRKDLAERMASTIRHNRARGMHKIELMT
HHHHHCCHHHEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RLVGELTRSGMSDSWIRRNLGMDKDELLRLKQISGLAELFADKEFRKAVE
HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]