| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is yfbL [C]
Identifier: 29347599
GI number: 29347599
Start: 2746623
End: 2747645
Strand: Reverse
Name: yfbL [C]
Synonym: BT_2189
Alternate gene names: 29347599
Gene position: 2747645-2746623 (Counterclockwise)
Preceding gene: 29347600
Following gene: 29347593
Centisome position: 43.89
GC content: 44.48
Gene sequence:
>1023_bases ATGGACTCTAAATTATATACCACGATGAAACAAAGAATTATATTATTCGGATTAATACTTGTAGGAACAGTAACTTTTGC ACAGTCTCCCGAAGAAAAGGGCTTGAACACGATCAACCGTTCTTCTGCCGAAGCAACAATCGGTTTCCTTGCAAGTGATG AATTACAGGGACGTGAAGCCGGATTCCACGGTTCGTATGTCTCCTCTGAGTATATAGCATCTATCTTACAATGGATGGGA ATCCAACCTCTGAACGAAAGCTACTTCCAGCCTTTTGATGCTTACCGCAAAGAGCGTCAGAAGAAAGGACGTCTGGAAGT TCATCCGGACTCTGTAGCGAAGCTGAAACAGGAAGTTCATCAAAAACTATCTATGAGGAACGTACTGGCTATGATTCCCG GTAAGAATACGAAGGAATATGTCATCGTAGGCGCTCACTTTGACCATTTGGGGATAGACCCGGCACTTGACGGAGATCAG ATTTATAACGGCGCGGATGACAATGCTTCCGGTGTCTCGGCTGTATTGCAGATTGCCCGGGCATTTCTTGCAAGCGGACA ACAACCGGAGCGAAATGTAATCTTTGCCTTTTGGGACGGAGAAGAAAAGGGATTGCTCGGTTCTAAATATTTTGTACAGA CTTGCCCTTTTGTTTCGCAGATCAAGGGATATCTCAACTTTGATATGATAGGTCGCAACAATAAACCGGAACAACCGAAA CATGTCGTCTATTTCTATACAGCTGCTCATCCCTCTTTTGGAGACTGGCTGAAAAAGGATATTAAGAAGTATGGTTTACA GTTGGAACCGGACTATCGTGCCTGGGACAATCCGGTAGGGGGCAGTGACAATGGAACGTTTGCCAAAGCAGGTATTCCTA TTATCTGGTATCATACGGACGGACATCCCGATTATCACCAGCCATCCGATCATGCTGACCGGTTAAACTGGGATAAGATA GTGGAAATCACCAAGGCTTCTTTTCTTAATATGTGGAAGATGGCCAATGAAGCTTCATGGTAA
Upstream 100 bases:
>100_bases GTAGAAAGAGTGAGCAGCCAAATCTTATAAAAGATGGCAACTGCTTACTCTTTTTTTGTATTTAAGGATAGATTCTGTGT TCTTTTCGTACTTTTGTAAC
Downstream 100 bases:
>100_bases CTCAGCCTCACTGAAAGGCTGTTTTACATCTTGCAATAAAGGGCGGAAGGAATCAGTTTGAATAACCATGCCACATATTT CCATCTTTTGGAGATAAAGG
Product: aminopeptidase
Products: NA
Alternate protein names: SGAP [H]
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MDSKLYTTMKQRIILFGLILVGTVTFAQSPEEKGLNTINRSSAEATIGFLASDELQGREAGFHGSYVSSEYIASILQWMG IQPLNESYFQPFDAYRKERQKKGRLEVHPDSVAKLKQEVHQKLSMRNVLAMIPGKNTKEYVIVGAHFDHLGIDPALDGDQ IYNGADDNASGVSAVLQIARAFLASGQQPERNVIFAFWDGEEKGLLGSKYFVQTCPFVSQIKGYLNFDMIGRNNKPEQPK HVVYFYTAAHPSFGDWLKKDIKKYGLQLEPDYRAWDNPVGGSDNGTFAKAGIPIIWYHTDGHPDYHQPSDHADRLNWDKI VEITKASFLNMWKMANEASW
Sequences:
>Translated_340_residues MDSKLYTTMKQRIILFGLILVGTVTFAQSPEEKGLNTINRSSAEATIGFLASDELQGREAGFHGSYVSSEYIASILQWMG IQPLNESYFQPFDAYRKERQKKGRLEVHPDSVAKLKQEVHQKLSMRNVLAMIPGKNTKEYVIVGAHFDHLGIDPALDGDQ IYNGADDNASGVSAVLQIARAFLASGQQPERNVIFAFWDGEEKGLLGSKYFVQTCPFVSQIKGYLNFDMIGRNNKPEQPK HVVYFYTAAHPSFGDWLKKDIKKYGLQLEPDYRAWDNPVGGSDNGTFAKAGIPIIWYHTDGHPDYHQPSDHADRLNWDKI VEITKASFLNMWKMANEASW >Mature_340_residues MDSKLYTTMKQRIILFGLILVGTVTFAQSPEEKGLNTINRSSAEATIGFLASDELQGREAGFHGSYVSSEYIASILQWMG IQPLNESYFQPFDAYRKERQKKGRLEVHPDSVAKLKQEVHQKLSMRNVLAMIPGKNTKEYVIVGAHFDHLGIDPALDGDQ IYNGADDNASGVSAVLQIARAFLASGQQPERNVIFAFWDGEEKGLLGSKYFVQTCPFVSQIKGYLNFDMIGRNNKPEQPK HVVYFYTAAHPSFGDWLKKDIKKYGLQLEPDYRAWDNPVGGSDNGTFAKAGIPIIWYHTDGHPDYHQPSDHADRLNWDKI VEITKASFLNMWKMANEASW
Specific function: Specific for larger hydrophobic acids, especially leucine. No cleavage occurs if the next residue is proline [H]
COG id: COG2234
COG function: function code R; Predicted aminopeptidases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M28 family. M28A subfamily [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320623, Length=242, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007484 [H]
Pfam domain/function: PF04389 Peptidase_M28 [H]
EC number: =3.4.11.24 [H]
Molecular weight: Translated: 38360; Mature: 38360
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSKLYTTMKQRIILFGLILVGTVTFAQSPEEKGLNTINRSSAEATIGFLASDELQGREA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHCCCCCHHEEEEEECCCCCCCCC GFHGSYVSSEYIASILQWMGIQPLNESYFQPFDAYRKERQKKGRLEVHPDSVAKLKQEVH CCCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHH QKLSMRNVLAMIPGKNTKEYVIVGAHFDHLGIDPALDGDQIYNGADDNASGVSAVLQIAR HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH AFLASGQQPERNVIFAFWDGEEKGLLGSKYFVQTCPFVSQIKGYLNFDMIGRNNKPEQPK HHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHCCEEEECCCCCCCCCC HVVYFYTAAHPSFGDWLKKDIKKYGLQLEPDYRAWDNPVGGSDNGTFAKAGIPIIWYHTD EEEEEEEECCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCEEECCCEEEEEECC GHPDYHQPSDHADRLNWDKIVEITKASFLNMWKMANEASW CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MDSKLYTTMKQRIILFGLILVGTVTFAQSPEEKGLNTINRSSAEATIGFLASDELQGREA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHCCCCCHHEEEEEECCCCCCCCC GFHGSYVSSEYIASILQWMGIQPLNESYFQPFDAYRKERQKKGRLEVHPDSVAKLKQEVH CCCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHH QKLSMRNVLAMIPGKNTKEYVIVGAHFDHLGIDPALDGDQIYNGADDNASGVSAVLQIAR HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH AFLASGQQPERNVIFAFWDGEEKGLLGSKYFVQTCPFVSQIKGYLNFDMIGRNNKPEQPK HHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHCCEEEECCCCCCCCCC HVVYFYTAAHPSFGDWLKKDIKKYGLQLEPDYRAWDNPVGGSDNGTFAKAGIPIIWYHTD EEEEEEEECCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCEEECCCEEEEEECC GHPDYHQPSDHADRLNWDKIVEITKASFLNMWKMANEASW CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8665903; 2503378; 8444149; 9048953 [H]