| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347589
Identifier: 29347589
GI number: 29347589
Start: 2737773
End: 2738837
Strand: Reverse
Name: 29347589
Synonym: BT_2179
Alternate gene names: NA
Gene position: 2738837-2737773 (Counterclockwise)
Preceding gene: 29347591
Following gene: 29347585
Centisome position: 43.75
GC content: 45.35
Gene sequence:
>1065_bases ATGAAAATAGGAGATAAGGTGCGTTTCCTCAGTGAGGTAGGCGGTGGAATCGTAACAGGATTCAAAGGAAAAGACTTTGT ACTGGTGGAAGATGCGGATGGTTTTGATATCCCGATGCCGATACGTGAATGTGTCGTGATTGAGGCGGATGATTACAATA TAAAACGCAAGCCTGCCGCGACAGCTCCGAAGCAGGAGGAACCCGCGAAGCCGGCCAAACCGGAAATGCCGGTTATACAG CGCCAGCCGGAAGTGCGTGGCGGTGATACGTTGAATGTGTTTTTGGCTTATGTGCCCGAAGATGCCAAAGCGATGATGAC TACTCCTTTCGAGGCATATTTGGTGAATGACAGCAATTACTATCTGTATTATACTTATCTGAGTGCGGAAGGAAAGGCTT GGAACAACCGTTCACATGGACTGGTAGAGCCGAATACCAAACTGTTACTGGAAGAATTCACCAAGGATGTATTGAATGAA ATGGAACGGGTAGCTGTCCAGCTGATCGCTTTCAAGGATGGAAAGCCTGCTGCCATCAAACCTGCTGTCAGCGTAGAGCT GAGGATTGATACGGTGAAATTCTATAAACTGCATACATTCAGTGCTTCCGATTTCTTCGAAGAACCTGCTCTGATTTATG ATATTGTGAAAGATGACGTGCCTGCCAAGCAGGTATATGTGTCGGCGGAAGAGATTCAGTCAGCTTTGTTGCAGAAAAAG TTTGTGGATAAACCCAAGTCGCAGCCTATTATGAAGCCCAACCACGGTCAGAGCGGAAAAAATGGGATTATTGAAGTAGA CCTTCATATTGATTCTCTGCTTGATGATACGCACGGAATGAGTAACAGCGAAATTCTGAACTACCAACTGGACAAATTCC GTGAAGTAATAGAGGCGAATAAAGAGAAGCGTGAGCAGAAAGTTGTGTTTATTCACGGAAAAGGAGACGGAGTGCTTCGG AAAGCCATTATTGATGAATTGAAACGGAAACACAGCAATTACCGTTATCAGGATGCCTCTTTTCAGGAATATGGTTTCGG GGCTACCATGGTGACTATCAAATGA
Upstream 100 bases:
>100_bases AATCGTTCCGTTATATTTTGCGGCAAAGTTACTGTATTTTCATATAAATCCCTATCTTTGTTACCCGTTTTAAGTTTGAA TTTTAATAGGAGATACAATA
Downstream 100 bases:
>100_bases TTCCGGTGTACTTGTAAATGATGCTGAAAATGTATTTGCCGGAATAAAGTCCGGCAGGTGGGATGAGATAAAAAGAAGGG TGGAGAACTTGACCGGTCTC
Product: putative DNA mismatch repair protein
Products: NA
Alternate protein names: Smr Domain-Containing Protein
Number of amino acids: Translated: 354; Mature: 354
Protein sequence:
>354_residues MKIGDKVRFLSEVGGGIVTGFKGKDFVLVEDADGFDIPMPIRECVVIEADDYNIKRKPAATAPKQEEPAKPAKPEMPVIQ RQPEVRGGDTLNVFLAYVPEDAKAMMTTPFEAYLVNDSNYYLYYTYLSAEGKAWNNRSHGLVEPNTKLLLEEFTKDVLNE MERVAVQLIAFKDGKPAAIKPAVSVELRIDTVKFYKLHTFSASDFFEEPALIYDIVKDDVPAKQVYVSAEEIQSALLQKK FVDKPKSQPIMKPNHGQSGKNGIIEVDLHIDSLLDDTHGMSNSEILNYQLDKFREVIEANKEKREQKVVFIHGKGDGVLR KAIIDELKRKHSNYRYQDASFQEYGFGATMVTIK
Sequences:
>Translated_354_residues MKIGDKVRFLSEVGGGIVTGFKGKDFVLVEDADGFDIPMPIRECVVIEADDYNIKRKPAATAPKQEEPAKPAKPEMPVIQ RQPEVRGGDTLNVFLAYVPEDAKAMMTTPFEAYLVNDSNYYLYYTYLSAEGKAWNNRSHGLVEPNTKLLLEEFTKDVLNE MERVAVQLIAFKDGKPAAIKPAVSVELRIDTVKFYKLHTFSASDFFEEPALIYDIVKDDVPAKQVYVSAEEIQSALLQKK FVDKPKSQPIMKPNHGQSGKNGIIEVDLHIDSLLDDTHGMSNSEILNYQLDKFREVIEANKEKREQKVVFIHGKGDGVLR KAIIDELKRKHSNYRYQDASFQEYGFGATMVTIK >Mature_354_residues MKIGDKVRFLSEVGGGIVTGFKGKDFVLVEDADGFDIPMPIRECVVIEADDYNIKRKPAATAPKQEEPAKPAKPEMPVIQ RQPEVRGGDTLNVFLAYVPEDAKAMMTTPFEAYLVNDSNYYLYYTYLSAEGKAWNNRSHGLVEPNTKLLLEEFTKDVLNE MERVAVQLIAFKDGKPAAIKPAVSVELRIDTVKFYKLHTFSASDFFEEPALIYDIVKDDVPAKQVYVSAEEIQSALLQKK FVDKPKSQPIMKPNHGQSGKNGIIEVDLHIDSLLDDTHGMSNSEILNYQLDKFREVIEANKEKREQKVVFIHGKGDGVLR KAIIDELKRKHSNYRYQDASFQEYGFGATMVTIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39990; Mature: 39990
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: PS50828 SMR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIGDKVRFLSEVGGGIVTGFKGKDFVLVEDADGFDIPMPIRECVVIEADDYNIKRKPAA CCCCHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCC TAPKQEEPAKPAKPEMPVIQRQPEVRGGDTLNVFLAYVPEDAKAMMTTPFEAYLVNDSNY CCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCEEEEEEECCCE YLYYTYLSAEGKAWNNRSHGLVEPNTKLLLEEFTKDVLNEMERVAVQLIAFKDGKPAAIK EEEEEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEC PAVSVELRIDTVKFYKLHTFSASDFFEEPALIYDIVKDDVPAKQVYVSAEEIQSALLQKK CEEEEEEEEEEEEEEEEEECCCHHHHCCCHHEEHHHHCCCCHHHEEEEHHHHHHHHHHHH FVDKPKSQPIMKPNHGQSGKNGIIEVDLHIDSLLDDTHGMSNSEILNYQLDKFREVIEAN HHCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH KEKREQKVVFIHGKGDGVLRKAIIDELKRKHSNYRYQDASFQEYGFGATMVTIK HHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEC >Mature Secondary Structure MKIGDKVRFLSEVGGGIVTGFKGKDFVLVEDADGFDIPMPIRECVVIEADDYNIKRKPAA CCCCHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCC TAPKQEEPAKPAKPEMPVIQRQPEVRGGDTLNVFLAYVPEDAKAMMTTPFEAYLVNDSNY CCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCEEEEEEECCCE YLYYTYLSAEGKAWNNRSHGLVEPNTKLLLEEFTKDVLNEMERVAVQLIAFKDGKPAAIK EEEEEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEC PAVSVELRIDTVKFYKLHTFSASDFFEEPALIYDIVKDDVPAKQVYVSAEEIQSALLQKK CEEEEEEEEEEEEEEEEEECCCHHHHCCCHHEEHHHHCCCCHHHEEEEHHHHHHHHHHHH FVDKPKSQPIMKPNHGQSGKNGIIEVDLHIDSLLDDTHGMSNSEILNYQLDKFREVIEAN HHCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH KEKREQKVVFIHGKGDGVLRKAIIDELKRKHSNYRYQDASFQEYGFGATMVTIK HHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA