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The map label for this gene is rimM

Identifier: 29347414

GI number: 29347414

Start: 2520728

End: 2521267

Strand: Reverse

Name: rimM

Synonym: BT_2004

Alternate gene names: 29347414

Gene position: 2521267-2520728 (Counterclockwise)

Preceding gene: 29347415

Following gene: 29347413

Centisome position: 40.27

GC content: 49.26

Gene sequence:

>540_bases
ATGATAAAGAAAGAAGAAGTATATAAAATCGGACTATTCAACAAGCCGCACGGCATTCACGGCGAGTTGCAGTTTACCTT
CACGGACGATATCTTCGACCGTGTGGACTGCGATTATCTGATCTGTTTGCTCGACGGTATTTTCGTACCGTTTTTCATCG
AAGAATACCGTTTTCGTTCGGACTCCACCGCACTGGTGAAGCTTGAAGGCATAGATACGGCGGAACGCGCGCGTATGTTC
ACCAATGTCGAAGTCTACTTCCCGGTGAAGCACGCGGAAGAGGCGGAAGACGGCGAACTGTCGTGGAACTTCTTCGTCGG
TTTCCGCATGGAAGACGTTCGTCACGGCGAGCTGGGCGAAGTGGTCGAAGTGGATACCGCTACGGTGAACACCCTTTTTG
TGGTCGAACAGGAGGACGGAGAAGAACTCCTCGTCCCTGCACAGGAAGAATTTATAGTGGAAATCAATCAGGAAAAGAAG
CTCATCACAGTCGAGCTTCCCGAAGGATTGTTGAATTTGGAAGATTTGGAGGAAGATTAA

Upstream 100 bases:

>100_bases
CCGAAGGAACCAGCACGATCAGCAATATCGAACAGATAGACCGTGGCTACCAGAACATCGAAGGACGACTTAACGCCATC
GGCGCCAGAATCACTCGAAT

Downstream 100 bases:

>100_bases
TAATTAATAAAGATGCCAAGAAAACGGAGTAAAGCATTTTGGAACAATTTCAAGTTCAAGTATAAACTCACCATTATCAA
TGAGAATACGCTTGAAGAAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIKKEEVYKIGLFNKPHGIHGELQFTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFRSDSTALVKLEGIDTAERARMF
TNVEVYFPVKHAEEAEDGELSWNFFVGFRMEDVRHGELGEVVEVDTATVNTLFVVEQEDGEELLVPAQEEFIVEINQEKK
LITVELPEGLLNLEDLEED

Sequences:

>Translated_179_residues
MIKKEEVYKIGLFNKPHGIHGELQFTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFRSDSTALVKLEGIDTAERARMF
TNVEVYFPVKHAEEAEDGELSWNFFVGFRMEDVRHGELGEVVEVDTATVNTLFVVEQEDGEELLVPAQEEFIVEINQEKK
LITVELPEGLLNLEDLEED
>Mature_179_residues
MIKKEEVYKIGLFNKPHGIHGELQFTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFRSDSTALVKLEGIDTAERARMF
TNVEVYFPVKHAEEAEDGELSWNFFVGFRMEDVRHGELGEVVEVDTATVNTLFVVEQEDGEELLVPAQEEFIVEINQEKK
LITVELPEGLLNLEDLEED

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BACTN (Q8A682)

Other databases:

- EMBL:   AE015928
- RefSeq:   NP_810917.1
- ProteinModelPortal:   Q8A682
- GeneID:   1074179
- GenomeReviews:   AE015928_GR
- KEGG:   bth:BT_2004
- NMPDR:   fig|226186.1.peg.2004
- HOGENOM:   HBG703775
- OMA:   NLVPFFI
- ProtClustDB:   PRK00122
- BioCyc:   BTHE226186:BT_2004-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20733; Mature: 20733

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKEEVYKIGLFNKPHGIHGELQFTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFRS
CCCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
DSTALVKLEGIDTAERARMFTNVEVYFPVKHAEEAEDGELSWNFFVGFRMEDVRHGELGE
CCEEEEEEECCCCHHHHHEEECEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCCCC
VVEVDTATVNTLFVVEQEDGEELLVPAQEEFIVEINQEKKLITVELPEGLLNLEDLEED
EEEECCEEEEEEEEEECCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MIKKEEVYKIGLFNKPHGIHGELQFTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFRS
CCCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
DSTALVKLEGIDTAERARMFTNVEVYFPVKHAEEAEDGELSWNFFVGFRMEDVRHGELGE
CCEEEEEEECCCCHHHHHEEECEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCCCC
VVEVDTATVNTLFVVEQEDGEELLVPAQEEFIVEINQEKKLITVELPEGLLNLEDLEED
EEEECCEEEEEEEEEECCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663928