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The map label for this gene is yebA [H]

Identifier: 29347413

GI number: 29347413

Start: 2519858

End: 2520715

Strand: Reverse

Name: yebA [H]

Synonym: BT_2003

Alternate gene names: 29347413

Gene position: 2520715-2519858 (Counterclockwise)

Preceding gene: 29347414

Following gene: 29347412

Centisome position: 40.26

GC content: 50.93

Gene sequence:

>858_bases
ATGCCAAGAAAACGGAGTAAAGCATTTTGGAACAATTTCAAGTTCAAGTATAAACTCACCATTATCAATGAGAATACGCT
TGAAGAAATCGTGGGGCTTCGGGTATCCAAGCTGAACGGGCTTTCGGTGCTGTTGTCCGTGCTGGCGGTGCTTTTTCTGA
TTGCCGCCTGCATCATTGCCTTCACCCCTTTGCGCAACTATCTCCCCGGATATATGAACAGTGAAGTTCGCAGTCAGATC
GTGGACAACGCGCTCCGCGTGGATTCCTTGCAGGAACTGCTCAACAGGCAGAACCTCTACATCATGAACATACAGGATAT
TTTCAGCGGAAAAGTGCCCATAGACAGCGTGCAGACGCTCGACTCGCTGACCGCCGCCCGCGAAGACACCCTGATGGAAC
GTACCAAACGTGAAGAGGAATTTCGCCGCCAATACGAAGAAAATGAAAAATATAATCTGACTACGATCGTTTCGCAGCCG
GATGTCAACGGACTGATCCTGTATCGTCCGACCCGTGGAATGGTTTCCGACCATTTCAATGCCGATAAGAAACACTTTGG
AACGGATATTGCTGCCAACCCCAACGAAAGCGTGCTGGCAACCATGGACGGCACCGTCTTTCTGAGCACCTACACCGCCG
AAACCGGTTACGTGATAGGCGTACAGCACAGTCAGGATTTCGTCTCGATCTACAAGCATTGCGGCTCGCTGCTGAAAAAA
GAAGGCGACCGCGTGAAAGGAGGCGAAGCCATCGCACTGGTGGGAAACAGCGGAACGCTCAGCACAGGGCCGCATCTCCA
CTTCGAACTGTGGTACAAGGGACATCCTGTCAATCCGGAGAAATACATCGTGTTTTAA

Upstream 100 bases:

>100_bases
TATAGTGGAAATCAATCAGGAAAAGAAGCTCATCACAGTCGAGCTTCCCGAAGGATTGTTGAATTTGGAAGATTTGGAGG
AAGATTAATAATTAATAAAG

Downstream 100 bases:

>100_bases
AGCCAATGACGAGAAGTGGGATATACGATTATAAGTGACAAGTGACAGAGGAATTAGATAATAATGGATTCAGAAAAGAA
GAATAAGAAGAAACAAATAG

Product: putative membrane peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MPRKRSKAFWNNFKFKYKLTIINENTLEEIVGLRVSKLNGLSVLLSVLAVLFLIAACIIAFTPLRNYLPGYMNSEVRSQI
VDNALRVDSLQELLNRQNLYIMNIQDIFSGKVPIDSVQTLDSLTAAREDTLMERTKREEEFRRQYEENEKYNLTTIVSQP
DVNGLILYRPTRGMVSDHFNADKKHFGTDIAANPNESVLATMDGTVFLSTYTAETGYVIGVQHSQDFVSIYKHCGSLLKK
EGDRVKGGEAIALVGNSGTLSTGPHLHFELWYKGHPVNPEKYIVF

Sequences:

>Translated_285_residues
MPRKRSKAFWNNFKFKYKLTIINENTLEEIVGLRVSKLNGLSVLLSVLAVLFLIAACIIAFTPLRNYLPGYMNSEVRSQI
VDNALRVDSLQELLNRQNLYIMNIQDIFSGKVPIDSVQTLDSLTAAREDTLMERTKREEEFRRQYEENEKYNLTTIVSQP
DVNGLILYRPTRGMVSDHFNADKKHFGTDIAANPNESVLATMDGTVFLSTYTAETGYVIGVQHSQDFVSIYKHCGSLLKK
EGDRVKGGEAIALVGNSGTLSTGPHLHFELWYKGHPVNPEKYIVF
>Mature_284_residues
PRKRSKAFWNNFKFKYKLTIINENTLEEIVGLRVSKLNGLSVLLSVLAVLFLIAACIIAFTPLRNYLPGYMNSEVRSQIV
DNALRVDSLQELLNRQNLYIMNIQDIFSGKVPIDSVQTLDSLTAAREDTLMERTKREEEFRRQYEENEKYNLTTIVSQPD
VNGLILYRPTRGMVSDHFNADKKHFGTDIAANPNESVLATMDGTVFLSTYTAETGYVIGVQHSQDFVSIYKHCGSLLKKE
GDRVKGGEAIALVGNSGTLSTGPHLHFELWYKGHPVNPEKYIVF

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=40, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789099, Length=116, Percent_Identity=38.7931034482759, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082297, Length=114, Percent_Identity=32.4561403508772, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 32272; Mature: 32141

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKRSKAFWNNFKFKYKLTIINENTLEEIVGLRVSKLNGLSVLLSVLAVLFLIAACIIA
CCCCCCCHHHCCCEEEEEEEEECCHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
FTPLRNYLPGYMNSEVRSQIVDNALRVDSLQELLNRQNLYIMNIQDIFSGKVPIDSVQTL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHHHHH
DSLTAAREDTLMERTKREEEFRRQYEENEKYNLTTIVSQPDVNGLILYRPTRGMVSDHFN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCHHHCCC
ADKKHFGTDIAANPNESVLATMDGTVFLSTYTAETGYVIGVQHSQDFVSIYKHCGSLLKK
CCHHHCCCCCCCCCCCCEEEEECCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHH
EGDRVKGGEAIALVGNSGTLSTGPHLHFELWYKGHPVNPEKYIVF
CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEC
>Mature Secondary Structure 
PRKRSKAFWNNFKFKYKLTIINENTLEEIVGLRVSKLNGLSVLLSVLAVLFLIAACIIA
CCCCCCHHHCCCEEEEEEEEECCHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
FTPLRNYLPGYMNSEVRSQIVDNALRVDSLQELLNRQNLYIMNIQDIFSGKVPIDSVQTL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHHHHH
DSLTAAREDTLMERTKREEEFRRQYEENEKYNLTTIVSQPDVNGLILYRPTRGMVSDHFN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCHHHCCC
ADKKHFGTDIAANPNESVLATMDGTVFLSTYTAETGYVIGVQHSQDFVSIYKHCGSLLKK
CCHHHCCCCCCCCCCCCEEEEECCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHH
EGDRVKGGEAIALVGNSGTLSTGPHLHFELWYKGHPVNPEKYIVF
CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]