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The map label for this gene is rbpE [H]

Identifier: 29347297

GI number: 29347297

Start: 2374978

End: 2375280

Strand: Reverse

Name: rbpE [H]

Synonym: BT_1887

Alternate gene names: 29347297

Gene position: 2375280-2374978 (Counterclockwise)

Preceding gene: 29347299

Following gene: 29347296

Centisome position: 37.94

GC content: 38.94

Gene sequence:

>303_bases
ATGAACATTTACATTTCAGGTTTAAGTTATGGCACAAATGATGCTGACTTGACAAATTTATTTGCAGAGTATGGAGAAGT
TTCTTCAGCCAAAGTTATTTTTGATAGAGAAACCGGCAGATCCAGAGGATTCGCTTTCGTAGAAATGACGAATGATGCAG
AAGGACAAAAAGCTATTGACGAATTGAATGGAGTTGAATATGACCAGAAGGTTATTTCAGTGAGCGTTGCACGTCCTCGC
GCTGAAAAACCGTCATACGGTGGTAACCGTGGAGGTGGTTATAACAATTCAAGAAGATATTAA

Upstream 100 bases:

>100_bases
ATTGTGTAGTTCTTCTTTATAATATATTATTAGTAAGTAGTCCTCTTCTGTAATTATCCTCCTCACTCCAAATTAGTATT
TATTTTTAATAAAATTTTAG

Downstream 100 bases:

>100_bases
TATCAGAATAAATAAAAGCAGAAGATAATGTCTTCTGCTTTTATACAGACTATTACCGTTTCATGATTCAACGGAGGAAT
TTCTGTTATACGGAGAAAAC

Product: putative RNA-binding protein rbpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MNIYISGLSYGTNDADLTNLFAEYGEVSSAKVIFDRETGRSRGFAFVEMTNDAEGQKAIDELNGVEYDQKVISVSVARPR
AEKPSYGGNRGGGYNNSRRY

Sequences:

>Translated_100_residues
MNIYISGLSYGTNDADLTNLFAEYGEVSSAKVIFDRETGRSRGFAFVEMTNDAEGQKAIDELNGVEYDQKVISVSVARPR
AEKPSYGGNRGGGYNNSRRY
>Mature_100_residues
MNIYISGLSYGTNDADLTNLFAEYGEVSSAKVIFDRETGRSRGFAFVEMTNDAEGQKAIDELNGVEYDQKVISVSVARPR
AEKPSYGGNRGGGYNNSRRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI221139802, Length=90, Percent_Identity=36.6666666666667, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI4502847, Length=90, Percent_Identity=38.8888888888889, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=41.25, Blast_Score=79, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=37.6623376623377, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=32.4675324675325, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71980775, Length=85, Percent_Identity=38.8235294117647, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=38.2716049382716, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=38.2716049382716, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=38.2716049382716, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=38.2716049382716, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=38.2716049382716, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=38.2716049382716, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=38.2716049382716, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11014; Mature: 11014

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIYISGLSYGTNDADLTNLFAEYGEVSSAKVIFDRETGRSRGFAFVEMTNDAEGQKAID
CEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHH
ELNGVEYDQKVISVSVARPRAEKPSYGGNRGGGYNNSRRY
HHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIYISGLSYGTNDADLTNLFAEYGEVSSAKVIFDRETGRSRGFAFVEMTNDAEGQKAID
CEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHH
ELNGVEYDQKVISVSVARPRAEKPSYGGNRGGGYNNSRRY
HHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]