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The map label for this gene is rpoE [C]

Identifier: 29347287

GI number: 29347287

Start: 2362093

End: 2362683

Strand: Reverse

Name: rpoE [C]

Synonym: BT_1877

Alternate gene names: 29347287

Gene position: 2362683-2362093 (Counterclockwise)

Preceding gene: 29347288

Following gene: 29347286

Centisome position: 37.74

GC content: 36.38

Gene sequence:

>591_bases
ATGGAGAATACTGAAACTTTAATAGTGGAACAACTGAAGATAGGCAATGAAAATGCTTATCGTTACATATATGATCATCA
CTATGCCCTGCTCTGTTATGTTGCCAATGGTTATCTAAAAGATCAGTTCCTTTCCGAAACCATTGTAGGAGATACTATCT
TTCATTTATGGGAGATACGTGAGACTTTGGATATTTCAGTCTCTATCCGTAGTTACCTGCTGAGAGCTGTCCGTAATCGT
TGCATTAACTATCTTAATTCGGAACGTGAAAAGAGAGAAATAGCATTTTCTGCTCTTATGCCCGATGAGATAACGGATGA
TAAAATCATACTGTCCGATTCGCATCCGTTAGGTATTTTACTGGAACGTGAACTTGAAAACGAAATATATAAGGCTATCG
ATAAATTGCCGGACGAATGCCGTCGGGTTTTTGCTAAAAGTCGCTTTGAAGGAAAATCATACGAAGAAATTTCCGGTGAA
CTGGGAATATCTATTAATACAGTTAAGTATCATATAAAGAATGCTTTAGCTTCTTTACACGCTCATTTGAGTAAGTACCT
GATTTCTCTATTACTATTTTTTTTCAGGTAA

Upstream 100 bases:

>100_bases
ATCCCTCCAAAGTTTTTTTCTTTGGAGGGATTTTTGGCTTTATATGCTTTAAATTCGAATAATTCTCTAAATTTGTGCTA
TTAATCTGACTGGTACATTC

Downstream 100 bases:

>100_bases
AGCGAAAAAAAATCATTTTCTGACTACCCTTAATTAAAAAACAACTGTCTCCTTTATAGAAAGCATAAATATGGAAGAAG
AAAATAAACATATTGATGAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor RpoE; ECF Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MENTETLIVEQLKIGNENAYRYIYDHHYALLCYVANGYLKDQFLSETIVGDTIFHLWEIRETLDISVSIRSYLLRAVRNR
CINYLNSEREKREIAFSALMPDEITDDKIILSDSHPLGILLERELENEIYKAIDKLPDECRRVFAKSRFEGKSYEEISGE
LGISINTVKYHIKNALASLHAHLSKYLISLLLFFFR

Sequences:

>Translated_196_residues
MENTETLIVEQLKIGNENAYRYIYDHHYALLCYVANGYLKDQFLSETIVGDTIFHLWEIRETLDISVSIRSYLLRAVRNR
CINYLNSEREKREIAFSALMPDEITDDKIILSDSHPLGILLERELENEIYKAIDKLPDECRRVFAKSRFEGKSYEEISGE
LGISINTVKYHIKNALASLHAHLSKYLISLLLFFFR
>Mature_196_residues
MENTETLIVEQLKIGNENAYRYIYDHHYALLCYVANGYLKDQFLSETIVGDTIFHLWEIRETLDISVSIRSYLLRAVRNR
CINYLNSEREKREIAFSALMPDEITDDKIILSDSHPLGILLERELENEIYKAIDKLPDECRRVFAKSRFEGKSYEEISGE
LGISINTVKYHIKNALASLHAHLSKYLISLLLFFFR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22942; Mature: 22942

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTETLIVEQLKIGNENAYRYIYDHHYALLCYVANGYLKDQFLSETIVGDTIFHLWEIR
CCCCHHHHHHHHHCCCCCCEEEEECCHHEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHH
ETLDISVSIRSYLLRAVRNRCINYLNSEREKREIAFSALMPDEITDDKIILSDSHPLGIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHH
LERELENEIYKAIDKLPDECRRVFAKSRFEGKSYEEISGELGISINTVKYHIKNALASLH
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHH
AHLSKYLISLLLFFFR
HHHHHHHHHHHHHHHC
>Mature Secondary Structure
MENTETLIVEQLKIGNENAYRYIYDHHYALLCYVANGYLKDQFLSETIVGDTIFHLWEIR
CCCCHHHHHHHHHCCCCCCEEEEECCHHEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHH
ETLDISVSIRSYLLRAVRNRCINYLNSEREKREIAFSALMPDEITDDKIILSDSHPLGIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHH
LERELENEIYKAIDKLPDECRRVFAKSRFEGKSYEEISGELGISINTVKYHIKNALASLH
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHH
AHLSKYLISLLLFFFR
HHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA