Click here to switch to the map view.

The map label for this gene is wcaJ [H]

Identifier: 29347118

GI number: 29347118

Start: 2104941

End: 2105567

Strand: Reverse

Name: wcaJ [H]

Synonym: BT_1708

Alternate gene names: 29347118

Gene position: 2105567-2104941 (Counterclockwise)

Preceding gene: 29347119

Following gene: 29347117

Centisome position: 33.63

GC content: 39.71

Gene sequence:

>627_bases
ATGGAACAACAAACAACTTTTATTCCCGACGGAATGAATGCTTTTGAGCGCAATGTAAAGCGAATTGGGGATTGCATTAT
TGCGGGCATATTACTGATTATTTTTTCTCCTTTATTTTTAATCTGTTATATAGCTGTGAAACGTGAAGATGGTGGTCCGG
CTATTTTCAAACAGGAACGTATCGGTCGTTTCGGCCGTCCGTTTTATATTTATAAGTTCCGCAGTATGCGTTTGGATGCG
GAAAAAATGGGTCCTGCGCTATATAGGGGTGGGAAAGATAAACGATTGACTAAAGTGGGTAAGTTTTTGCGTGAACATCA
TTTGGATGAATTGCCGCAACTTTGGAATGTCTTCTGCGGGCAGATGGCTTTTATTGGTCCACGTCCGGAGCGTAAGTATT
TCATTGATCAAATAATGGAACACGATGCTCGTTACGTATTTTTGTATCAGATACGACCGGGTGTTACTTCGTATGCTACG
TTATACAATGGGTACACGGATACGATGGATAAAATGTTGCGTCGTCTTCGCTATGATTTGTTTTATTTGCAGCATCGCTC
ATGGTGGTTTGATTTTAAGATCTTGGTGAAGACATTTATAAATATTTGTTTTGGCAAGAAGTTTTAG

Upstream 100 bases:

>100_bases
ATACGGGTGATTACTAGGATGATGCCCAACACTTTACGAGCTATCTTGTATAAAAAAGCTCTGAGAAAATAGTCTTTAAC
CAAACTATAATTAATAATTT

Downstream 100 bases:

>100_bases
CAGAGAAAATTGTTGTATTTATAGTGAAACACCGTTGTTGAATACGAAGAAGTTGGTAATGGGCAGAAAAAAGCAATATC
TCTTTGATTATTGAAGGAAA

Product: putative capsular polysaccharide biosynthesis glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MEQQTTFIPDGMNAFERNVKRIGDCIIAGILLIIFSPLFLICYIAVKREDGGPAIFKQERIGRFGRPFYIYKFRSMRLDA
EKMGPALYRGGKDKRLTKVGKFLREHHLDELPQLWNVFCGQMAFIGPRPERKYFIDQIMEHDARYVFLYQIRPGVTSYAT
LYNGYTDTMDKMLRRLRYDLFYLQHRSWWFDFKILVKTFINICFGKKF

Sequences:

>Translated_208_residues
MEQQTTFIPDGMNAFERNVKRIGDCIIAGILLIIFSPLFLICYIAVKREDGGPAIFKQERIGRFGRPFYIYKFRSMRLDA
EKMGPALYRGGKDKRLTKVGKFLREHHLDELPQLWNVFCGQMAFIGPRPERKYFIDQIMEHDARYVFLYQIRPGVTSYAT
LYNGYTDTMDKMLRRLRYDLFYLQHRSWWFDFKILVKTFINICFGKKF
>Mature_208_residues
MEQQTTFIPDGMNAFERNVKRIGDCIIAGILLIIFSPLFLICYIAVKREDGGPAIFKQERIGRFGRPFYIYKFRSMRLDA
EKMGPALYRGGKDKRLTKVGKFLREHHLDELPQLWNVFCGQMAFIGPRPERKYFIDQIMEHDARYVFLYQIRPGVTSYAT
LYNGYTDTMDKMLRRLRYDLFYLQHRSWWFDFKILVKTFINICFGKKF

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG2148

COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial sugar transferase family [H]

Homologues:

Organism=Escherichia coli, GI1788360, Length=196, Percent_Identity=37.7551020408163, Blast_Score=140, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003362
- InterPro:   IPR017475
- InterPro:   IPR017473 [H]

Pfam domain/function: PF02397 Bac_transf [H]

EC number: NA

Molecular weight: Translated: 24836; Mature: 24836

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQQTTFIPDGMNAFERNVKRIGDCIIAGILLIIFSPLFLICYIAVKREDGGPAIFKQER
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
IGRFGRPFYIYKFRSMRLDAEKMGPALYRGGKDKRLTKVGKFLREHHLDELPQLWNVFCG
HCCCCCCEEEEEHHHHCCCHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMAFIGPRPERKYFIDQIMEHDARYVFLYQIRPGVTSYATLYNGYTDTMDKMLRRLRYDL
HHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHH
FYLQHRSWWFDFKILVKTFINICFGKKF
HHHHHCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQQTTFIPDGMNAFERNVKRIGDCIIAGILLIIFSPLFLICYIAVKREDGGPAIFKQER
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
IGRFGRPFYIYKFRSMRLDAEKMGPALYRGGKDKRLTKVGKFLREHHLDELPQLWNVFCG
HCCCCCCEEEEEHHHHCCCHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMAFIGPRPERKYFIDQIMEHDARYVFLYQIRPGVTSYATLYNGYTDTMDKMLRRLRYDL
HHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHH
FYLQHRSWWFDFKILVKTFINICFGKKF
HHHHHCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8759852; 9097040; 9278503 [H]