| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347042
Identifier: 29347042
GI number: 29347042
Start: 2017425
End: 2019089
Strand: Reverse
Name: 29347042
Synonym: BT_1632
Alternate gene names: NA
Gene position: 2019089-2017425 (Counterclockwise)
Preceding gene: 29347043
Following gene: 29347041
Centisome position: 32.25
GC content: 44.62
Gene sequence:
>1665_bases ATGAGAAGCAAATTCCTATTTCTTTGTCTCTTCCTTTTTGGAATGTTGACAGCTTGCAAAGACACAAAATGGGTAGATGT TCCTACCGGTACTCCTCCCGAAGGTTCAGTTACGGGAAAACCGGGCGAAACTGAAGAACCCGATGATCCTGATCCTACAG ATAAAACATTTATCAACTGTTCTTATATCCGTGGTGATTTTTTTGAAACGAATCGAATTTCGGGAGCAAGTATGGGTGCT TGCAACGATTTGATTTATCTGACGGCACGTCCTTATGCTGACGGTGATTTGACTTTTGACTTACCCGTGAATGATGCAAC ACTTACAGGGGCAGCAACGTATGCTGCTTCTTATAATGGACGCAACGGAGTACTCAAATTGGATGGTACCGGCAAGATGA ACGCCGGCGACGGTCTGTTGCATTCACCGGACGGAGCATTCAAGAAATTCACATTCGGTACTTATATATATGTCAGCGAG TGGGTGGACGGAGCTTGCTTGTTTAAAAAGGTAGACGGCGGTTCTGTTGTCATCGCTTTCCAGTTGGGAGCAACGGAAGG TAATCTGAAACTGACTGTCGGAAGTGCTACGGCCACAGTGACGAATAGCGCATTGAAATCAGGAGCATGGCATTATGTAG CGGTGACTTATGATGGTGGCGCTGCCAAGTTATATATAGATACGAACAATACTGCCACTGACTTTACAGGCTCTCTGCCT GCTTCGGTTCCTAATACCCGTGCTGACTTTGTGATGGGAGAGAACCTAAAAGGTTATCTGGATGAAACATTTGTGAACAG TCTGCTGATGGGTACATTAGGAAGAAATCCCATCTCTTTTGATAATTGGAATAACACGAAAACACTTGCTTACTGGAAAT ATGATGACGCTGCAAAACCTGGTAAGGACTCGCATACATGGGCTATTCGTCTGGAGCAGATTCGTACTGCCTTGAATGGA CAGGCAGGTGACCGGAAGATACGTTTGGGTATTGCTGGCGGCGAATGGTTGAAAATGGTCGGCAACGCAACTGCCCGTAC TAACTTTGCCAATAACGTAAAGAAGGTGATCGAGCAATATAATCTGGATGGTGCGGACCTCGACTTTGAATGGGCTTATT CAGGTACTGATTTATCCAATTACAGTAAAGCCATCGTACAATTGCGTGAAGTATTGGGGAAAGATGTATTTTTGACCGTA TCCCTACATCCTGTTTCTTACAAAATAAGTGCGGAAGCTATTGCAGCAGTCGATTTTATCTCGTTGCAATGCTATGGACC TTCAGTAGAACTTTTCTCTATGGAACGTTTCAAATCGGATGGTAAAGCTGCAGTCGATTATGGAATACCTCAGGATAAAC TGGTCATGGGAGTACCTTTCTACGGGACTACGGGTACTGCCGGCGAGCAGGCTGCTTATTTTGATCTTGTCGGTAAGGGT AACCTGACTAATACTTCTGCAGACACATGGAGTTATGAAGGAAAGAACTATACGCTCAACAGCCAGAATACGATTCGCCA GAAGACACAATATGTGTGCGAGAATGGTTTTGGAGGAATCATGAGCTGGGACTTGGCTACAGACGTAGACGTGACGCATG AGATGTCTTTGTTGAAAGCAGTGAAAGAAGAGCTTGATTACTATGCCAATCCTACTGTAGAATAA
Upstream 100 bases:
>100_bases ATCGAACATCTTAAATCTTAGATATAACCTAAATTTGTGGCAGTGAATGTCAGGAAAGACTTCGCTACTTATATAAAAGG TAATCTTAATTAATAAACTT
Downstream 100 bases:
>100_bases AATAGAATCTTAATTAGTAAATATAATATTATGGAAAAAAAGAAGTTCGTGAGAAAACAAGAACGCTTTGTTCTGTTTCT GATGCTCCTGTTATTATTTC
Product: chitinase
Products: NA
Alternate protein names: Chitinase; Glycoside Hydrolase Family Protein; Glycosyl Hydrolase; Glycoside Hydrolase; Chitinase C
Number of amino acids: Translated: 554; Mature: 554
Protein sequence:
>554_residues MRSKFLFLCLFLFGMLTACKDTKWVDVPTGTPPEGSVTGKPGETEEPDDPDPTDKTFINCSYIRGDFFETNRISGASMGA CNDLIYLTARPYADGDLTFDLPVNDATLTGAATYAASYNGRNGVLKLDGTGKMNAGDGLLHSPDGAFKKFTFGTYIYVSE WVDGACLFKKVDGGSVVIAFQLGATEGNLKLTVGSATATVTNSALKSGAWHYVAVTYDGGAAKLYIDTNNTATDFTGSLP ASVPNTRADFVMGENLKGYLDETFVNSLLMGTLGRNPISFDNWNNTKTLAYWKYDDAAKPGKDSHTWAIRLEQIRTALNG QAGDRKIRLGIAGGEWLKMVGNATARTNFANNVKKVIEQYNLDGADLDFEWAYSGTDLSNYSKAIVQLREVLGKDVFLTV SLHPVSYKISAEAIAAVDFISLQCYGPSVELFSMERFKSDGKAAVDYGIPQDKLVMGVPFYGTTGTAGEQAAYFDLVGKG NLTNTSADTWSYEGKNYTLNSQNTIRQKTQYVCENGFGGIMSWDLATDVDVTHEMSLLKAVKEELDYYANPTVE
Sequences:
>Translated_554_residues MRSKFLFLCLFLFGMLTACKDTKWVDVPTGTPPEGSVTGKPGETEEPDDPDPTDKTFINCSYIRGDFFETNRISGASMGA CNDLIYLTARPYADGDLTFDLPVNDATLTGAATYAASYNGRNGVLKLDGTGKMNAGDGLLHSPDGAFKKFTFGTYIYVSE WVDGACLFKKVDGGSVVIAFQLGATEGNLKLTVGSATATVTNSALKSGAWHYVAVTYDGGAAKLYIDTNNTATDFTGSLP ASVPNTRADFVMGENLKGYLDETFVNSLLMGTLGRNPISFDNWNNTKTLAYWKYDDAAKPGKDSHTWAIRLEQIRTALNG QAGDRKIRLGIAGGEWLKMVGNATARTNFANNVKKVIEQYNLDGADLDFEWAYSGTDLSNYSKAIVQLREVLGKDVFLTV SLHPVSYKISAEAIAAVDFISLQCYGPSVELFSMERFKSDGKAAVDYGIPQDKLVMGVPFYGTTGTAGEQAAYFDLVGKG NLTNTSADTWSYEGKNYTLNSQNTIRQKTQYVCENGFGGIMSWDLATDVDVTHEMSLLKAVKEELDYYANPTVE >Mature_554_residues MRSKFLFLCLFLFGMLTACKDTKWVDVPTGTPPEGSVTGKPGETEEPDDPDPTDKTFINCSYIRGDFFETNRISGASMGA CNDLIYLTARPYADGDLTFDLPVNDATLTGAATYAASYNGRNGVLKLDGTGKMNAGDGLLHSPDGAFKKFTFGTYIYVSE WVDGACLFKKVDGGSVVIAFQLGATEGNLKLTVGSATATVTNSALKSGAWHYVAVTYDGGAAKLYIDTNNTATDFTGSLP ASVPNTRADFVMGENLKGYLDETFVNSLLMGTLGRNPISFDNWNNTKTLAYWKYDDAAKPGKDSHTWAIRLEQIRTALNG QAGDRKIRLGIAGGEWLKMVGNATARTNFANNVKKVIEQYNLDGADLDFEWAYSGTDLSNYSKAIVQLREVLGKDVFLTV SLHPVSYKISAEAIAAVDFISLQCYGPSVELFSMERFKSDGKAAVDYGIPQDKLVMGVPFYGTTGTAGEQAAYFDLVGKG NLTNTSADTWSYEGKNYTLNSQNTIRQKTQYVCENGFGGIMSWDLATDVDVTHEMSLLKAVKEELDYYANPTVE
Specific function: Unknown
COG id: COG3325
COG function: function code G; Chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60208; Mature: 60208
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSKFLFLCLFLFGMLTACKDTKWVDVPTGTPPEGSVTGKPGETEEPDDPDPTDKTFINC CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE SYIRGDFFETNRISGASMGACNDLIYLTARPYADGDLTFDLPVNDATLTGAATYAASYNG EEEECCCEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEECCEEEEEEECCC RNGVLKLDGTGKMNAGDGLLHSPDGAFKKFTFGTYIYVSEWVDGACLFKKVDGGSVVIAF CCCEEEECCCCCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCEEEEEE QLGATEGNLKLTVGSATATVTNSALKSGAWHYVAVTYDGGAAKLYIDTNNTATDFTGSLP EECCCCCCEEEEECCCEEEEEHHHHHCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCC ASVPNTRADFVMGENLKGYLDETFVNSLLMGTLGRNPISFDNWNNTKTLAYWKYDDAAKP CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCC GKDSHTWAIRLEQIRTALNGQAGDRKIRLGIAGGEWLKMVGNATARTNFANNVKKVIEQY CCCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCCHHCCHHHHHHHHHHHHH NLDGADLDFEWAYSGTDLSNYSKAIVQLREVLGKDVFLTVSLHPVSYKISAEAIAAVDFI CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECEEEEECHHHEEEEEEE SLQCYGPSVELFSMERFKSDGKAAVDYGIPQDKLVMGVPFYGTTGTAGEQAAYFDLVGKG EEEEECCCEEEEEHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCC NLTNTSADTWSYEGKNYTLNSQNTIRQKTQYVCENGFGGIMSWDLATDVDVTHEMSLLKA CCCCCCCCCEEECCCCEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHH VKEELDYYANPTVE HHHHHHHCCCCCCC >Mature Secondary Structure MRSKFLFLCLFLFGMLTACKDTKWVDVPTGTPPEGSVTGKPGETEEPDDPDPTDKTFINC CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE SYIRGDFFETNRISGASMGACNDLIYLTARPYADGDLTFDLPVNDATLTGAATYAASYNG EEEECCCEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEECCEEEEEEECCC RNGVLKLDGTGKMNAGDGLLHSPDGAFKKFTFGTYIYVSEWVDGACLFKKVDGGSVVIAF CCCEEEECCCCCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCEEEEEE QLGATEGNLKLTVGSATATVTNSALKSGAWHYVAVTYDGGAAKLYIDTNNTATDFTGSLP EECCCCCCEEEEECCCEEEEEHHHHHCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCC ASVPNTRADFVMGENLKGYLDETFVNSLLMGTLGRNPISFDNWNNTKTLAYWKYDDAAKP CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCC GKDSHTWAIRLEQIRTALNGQAGDRKIRLGIAGGEWLKMVGNATARTNFANNVKKVIEQY CCCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCCHHCCHHHHHHHHHHHHH NLDGADLDFEWAYSGTDLSNYSKAIVQLREVLGKDVFLTVSLHPVSYKISAEAIAAVDFI CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECEEEEECHHHEEEEEEE SLQCYGPSVELFSMERFKSDGKAAVDYGIPQDKLVMGVPFYGTTGTAGEQAAYFDLVGKG EEEEECCCEEEEEHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCC NLTNTSADTWSYEGKNYTLNSQNTIRQKTQYVCENGFGGIMSWDLATDVDVTHEMSLLKA CCCCCCCCCEEECCCCEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHH VKEELDYYANPTVE HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA