Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 29346982

GI number: 29346982

Start: 1935871

End: 1936374

Strand: Reverse

Name: rpoE [H]

Synonym: BT_1572

Alternate gene names: 29346982

Gene position: 1936374-1935871 (Counterclockwise)

Preceding gene: 29346984

Following gene: 29346981

Centisome position: 30.93

GC content: 41.27

Gene sequence:

>504_bases
ATGGAAAAAGTAGATTTTACTCAAGGAATATTGGCGATGGAGTCAGACCTGCATCGTTTCGCATATAAGTTGACTTCAGA
CCGTGATTCTGCCAACGACTTAGTTCAGGATTGTGTATTGCAGGCATTGGATAATCATGAGAAATTTACGCATGCCAAGA
ATCTGAAAGGATGGATGTTTACCATCATGCGTAATATCTTTGTCAACAACTACCGGCGCACGGTCCGCGAAATGAATTTG
ATCGATGATACCTATTCCATCAATCAGCAAAGTTTGATAGAAGATGAAGAAGGCGACCGTTTCGAGTTTGCTTATGACAT
GAAGCAGCTGTATAGAGTGATCCATTCCATCCCCGAAGATATGAAAGTTCCTTTCCAGATGTTTGTAGCTGGATTTAAAT
ACAGGGAAATTGCCGAAAAATTAGGATTGCCGATGGGGACGGTAAAGAGCCGACTTTTCTTTATCCGTAAGCGTCTGAAA
GAAGAATTGAAAGACTTCTCCTGA

Upstream 100 bases:

>100_bases
TAAGGAAAAATTGCCAAACTTATCGGAAGAATTGCTATTTATAATCGTTCTAAAAAAGCGGATCTTTGTATCGTACTAAT
TAGATAAATAAAATACGAGA

Downstream 100 bases:

>100_bases
TGCAACTTTCTAATTGAGTGATGTGTTTTAAGGTCAAAGTGAAGCCTTCCTGTCAAAATACGACGAATGACAGGAAGGCT
TATTTAATTTGAAATATTCT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MEKVDFTQGILAMESDLHRFAYKLTSDRDSANDLVQDCVLQALDNHEKFTHAKNLKGWMFTIMRNIFVNNYRRTVREMNL
IDDTYSINQQSLIEDEEGDRFEFAYDMKQLYRVIHSIPEDMKVPFQMFVAGFKYREIAEKLGLPMGTVKSRLFFIRKRLK
EELKDFS

Sequences:

>Translated_167_residues
MEKVDFTQGILAMESDLHRFAYKLTSDRDSANDLVQDCVLQALDNHEKFTHAKNLKGWMFTIMRNIFVNNYRRTVREMNL
IDDTYSINQQSLIEDEEGDRFEFAYDMKQLYRVIHSIPEDMKVPFQMFVAGFKYREIAEKLGLPMGTVKSRLFFIRKRLK
EELKDFS
>Mature_167_residues
MEKVDFTQGILAMESDLHRFAYKLTSDRDSANDLVQDCVLQALDNHEKFTHAKNLKGWMFTIMRNIFVNNYRRTVREMNL
IDDTYSINQQSLIEDEEGDRFEFAYDMKQLYRVIHSIPEDMKVPFQMFVAGFKYREIAEKLGLPMGTVKSRLFFIRKRLK
EELKDFS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19897; Mature: 19897

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKVDFTQGILAMESDLHRFAYKLTSDRDSANDLVQDCVLQALDNHEKFTHAKNLKGWMF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHH
TIMRNIFVNNYRRTVREMNLIDDTYSINQQSLIEDEEGDRFEFAYDMKQLYRVIHSIPED
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHH
MKVPFQMFVAGFKYREIAEKLGLPMGTVKSRLFFIRKRLKEELKDFS
HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKVDFTQGILAMESDLHRFAYKLTSDRDSANDLVQDCVLQALDNHEKFTHAKNLKGWMF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHH
TIMRNIFVNNYRRTVREMNLIDDTYSINQQSLIEDEEGDRFEFAYDMKQLYRVIHSIPED
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHH
MKVPFQMFVAGFKYREIAEKLGLPMGTVKSRLFFIRKRLKEELKDFS
HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]