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The map label for this gene is 29346969

Identifier: 29346969

GI number: 29346969

Start: 1926235

End: 1926699

Strand: Reverse

Name: 29346969

Synonym: BT_1559

Alternate gene names: NA

Gene position: 1926699-1926235 (Counterclockwise)

Preceding gene: 29346970

Following gene: 29346968

Centisome position: 30.78

GC content: 46.24

Gene sequence:

>465_bases
ATGTTGGCGGTATGCTACCGCTATACGGGCGATATGGATGCGGCGCACGATGTACTGCATGACGGTTTCATCAAGATTTT
TACCAACTTCTCGTTCCGGGGTGAATCCTCGCTTTGTACGTGGATCACACGGGTGATGGTGACACAGTCACTGGACTATC
TGAGACGGGAGAAACGAGTCAATCAGTTGGTAGTGCATGAAGAGCAGCTTCCCGACATACCGGATATTTCGTCGTCGGGA
GGAGGAGCAGGGATCTCCGAAGAACAATTAATGGCGTTTGTCGCCGAATTGCCGGATGGTTGCCGAACCGTTTTCAACCT
TTATGTGTTTGAAGAGAAATCGCACAAGGAGATAGCCGGGATGCTTCACATTAAAGAACATTCGTCTACTTCGCAGTTAC
ACAGAGCCAAGTATTTGTTAGCAAAAAGAATAAAAGAATATAGAAATCATGAAGAAAGAAAATGA

Upstream 100 bases:

>100_bases
AAGACAATTGGCATTGGAAAACGAGATAGAACTGATAAAGGGCTGTCGGGCAGGACAGGATTCAGCCCGAAAGGAACTTT
ACACCCTCTATGCCAAACAA

Downstream 100 bases:

>100_bases
TGAAATAACCGATCTGTTTCGCACTCGTCTCGCTGATGCCGGGATGACTGTTCGGGATGGCTTTTGGGAAGAGCTTTCGC
AGGATATCCCTGTGGCTTGT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma-W Factor; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MLAVCYRYTGDMDAAHDVLHDGFIKIFTNFSFRGESSLCTWITRVMVTQSLDYLRREKRVNQLVVHEEQLPDIPDISSSG
GGAGISEEQLMAFVAELPDGCRTVFNLYVFEEKSHKEIAGMLHIKEHSSTSQLHRAKYLLAKRIKEYRNHEERK

Sequences:

>Translated_154_residues
MLAVCYRYTGDMDAAHDVLHDGFIKIFTNFSFRGESSLCTWITRVMVTQSLDYLRREKRVNQLVVHEEQLPDIPDISSSG
GGAGISEEQLMAFVAELPDGCRTVFNLYVFEEKSHKEIAGMLHIKEHSSTSQLHRAKYLLAKRIKEYRNHEERK
>Mature_154_residues
MLAVCYRYTGDMDAAHDVLHDGFIKIFTNFSFRGESSLCTWITRVMVTQSLDYLRREKRVNQLVVHEEQLPDIPDISSSG
GGAGISEEQLMAFVAELPDGCRTVFNLYVFEEKSHKEIAGMLHIKEHSSTSQLHRAKYLLAKRIKEYRNHEERK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17764; Mature: 17764

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVCYRYTGDMDAAHDVLHDGFIKIFTNFSFRGESSLCTWITRVMVTQSLDYLRREKRV
CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NQLVVHEEQLPDIPDISSSGGGAGISEEQLMAFVAELPDGCRTVFNLYVFEEKSHKEIAG
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
MLHIKEHSSTSQLHRAKYLLAKRIKEYRNHEERK
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLAVCYRYTGDMDAAHDVLHDGFIKIFTNFSFRGESSLCTWITRVMVTQSLDYLRREKRV
CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NQLVVHEEQLPDIPDISSSGGGAGISEEQLMAFVAELPDGCRTVFNLYVFEEKSHKEIAG
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
MLHIKEHSSTSQLHRAKYLLAKRIKEYRNHEERK
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA