| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29346937
Identifier: 29346937
GI number: 29346937
Start: 1881405
End: 1883957
Strand: Reverse
Name: 29346937
Synonym: BT_1527
Alternate gene names: NA
Gene position: 1883957-1881405 (Counterclockwise)
Preceding gene: 29346938
Following gene: 29346936
Centisome position: 30.09
GC content: 46.77
Gene sequence:
>2553_bases ATGAGATTAATAATTAAAGGTGCAGTAGCGCTCTTTCTTTTATTGGCTATCAGTATTCCGCTAAGTGCCCAATACATAGT GCAGGGTGTGGTGACTGATTCTCTGACCAGAGAACCCTTATCTTATGTATCTGTACGTCTGAAAAACACGACCGAAGGAA CGACTACCGGAAGTGACGGACGCTTTTATTTCAAAACCCATCGCTCCGAAGGAGTGCTTGTGATCTCAACCGTAGGCTAT AATGAATATAGCCGGCTGATCCATCCGGCACGTAATCTTTCGTATAAAGTAGCACTTTCTCCCGCTACATATGCGCTCAA CGAAGTATTGGTGAAGCCTAAACGCGAGCATTACCGTAAGAAAGACAATCCCGCTGTGGAGTTTGTCCGTCGGATGATAG AACATCGTGACGACCATTCTCCTAATGAGAAAGACTTCTGGCAGCGCGACCGTTATGAGAAGACTACCTTTGCGCTGAAC AACTTCGACGAAGAGAAACAGAAGAAATGGCTATACCGCAAATTTGATTTCCTGACAGAATATGTAGACACCTCTGCCGT CACCGGAAAACCGATACTGACCGTATCTGCCCGTGAACTTCTTGCTACGGACTACTACCGCAAATCTCCTCATTCCGAAA AGCAGTGGGTGAAAGGACGCAAGCAGGCAGGAGTCGATGAATTCCTTTCCAAACAAGGTATGCAGGCTGCTATTAATGAA GTCTTTAAAGACGTGGACATTTACGAGAACAACATCTCCCTGTTCACCAATAAGTTCGTCAGCCCCTTATCCCGCATCGG GACAGGATTCTACAAATATTATCTGATGGATACCTTGCAGATCGGCGGTGAAACCTGTGCAGACCTTGCTTTCACCCCCT TTAATTCCGAATCTTTCGGTTTTAACGGGCACTTGTATGTCACGCTCGACTCTACCTACTTTGTCAAACGTGCCGTACTT AACTTCCCGAAGAAGATCAATCTGAACTTTGTCGATTATATGCTGCTTGAACAGGAATTTAAGCGGGCAGAAGACGGTAC TCGTCTGCTCGACCATGAAAGTATCACCGTAGAATTCAAACTGACCGAAGGACAGGATGGTATCTTTGCCCGTCGAGTGG CGGATTACAGTCATTATTCTTTCCTTCCGACCGAGGAAGCCGATAAAGCCTTCACCAAACCGGAACGTATCATCGAAGAA ACCGAAGCGCTGTCCCGACCCGAAACCTTCTGGGCGGAGAACCGTCCGCAAGCAGCCATCTCGCAACAGGAGAACTCCGT AGACCGCCTGATGGCGCAACTGCGTGGCTATCCGGTCTATTATTGGACGGAAAAGGTGCTATCCATTCTCTTCACCGGAT ACATCCCGACCTCTAAAGAAGCCCCTCTTTTCTATATCGGTCCCATGAATGCCACCATCAGCGGGAATACGCTGGAAGGA CCGCGTATCCGTGCTGGTGGAATGACGACCGCATGGCTCAACCCTCATCTGTTCGGCAAAGGCTATATCGCTTATGGCTT CAAAGACGAAAGGCTGAAAGGACTGGCGGAAGTAGAATACTCCTTTAAAAAGAAAAAGGAATATGCCAATGAATTTCCCA TCCATTCACTGAAAGTACGTTATGAATCGGACGTTAACCAATACGGACAAAACTATCTGTACACAAGCAAAGACAATGTC TTCCTTGCCTTGAAGCGTGAGAAAGATGATCGTATCGGCTATTACCGGCAAGCGGAAATGAGCTATACCAATGAGTTTTA TTCCGGTTTCTCCTTCCAGCTAACGGCACGCAGGCGGACGGATGAATCGAGCTACCTGATTCCTTTTCTGCGGAAAGACG GTGAGGTTTACTCTCCGGTTAAAGACTTCTCTACCAGTGCGGCGGAGTTGAAGCTGCGCTATGCCCCGAACGAGAAATTC TTTCAGACACAATGGAACCGCTTCCCTGTATCGCTGGATGCTCCGGTGTTTACACTGTCGCACACCATTGCCGGAAAAGG AGTACTGGGAAGTGATTACACCTATAATCATACCGAAGCGGGTATACAGAAACGTTTCTGGTTTTCCGCTTTCGGCTATA CGGATATTATTCTGAAAGCAGGGAAGGTATGGGATAAAGTTCCCTTTCCGTTGCTCATTATGCCGAATGCGAACCTTTCC TACACCATTCAGCCGGAATCCTATTCGTTAATGAATGCTATGGAGTTTATGAATGATGAATACTTTTCGTGGGACGTCAC CTATTTCCTCAACGGGTGGTTGTTCAATCGTATCCCATTGTTGAAAAAACTGAAATGGAGGGAAATAGTTTCCTGTCGTG GACTTTATGGGCATTTGAGTGATAAGAATAATCCGGATATGACAGACGGTTTGTTCGCTTTTCCGATAGCAAGTACCCGT ACAATGGGAAAAACACCTTACGTGGAGGCGGGTGTGGGTATTGAAAACATTTTCAAGGTATTACGTTTAGACTACGTCTG GCGGCTCACATATAGGGATTCGCCCGATATTGACAAGTCCGGCCTGAGGATAAGTCTTCACATGACCTTCTAA
Upstream 100 bases:
>100_bases TCAAACGAGAACAGTTCTTCCGCTATATAGACCTTTTTTTGTTCTGAAATCCCTCCTACCTTTGCCCCGCTCAATTCAAT AGGATGTTAAGGTATAAGAT
Downstream 100 bases:
>100_bases AAGTTAAATCCTGCTAATTGCAATGTTTATATAGCAAACAAAGGTCGCTTTAGTAATTAATTAATCTTATTTTTGCATCA ATTTTAGTTTAATTTTAATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MRLIIKGAVALFLLLAISIPLSAQYIVQGVVTDSLTREPLSYVSVRLKNTTEGTTTGSDGRFYFKTHRSEGVLVISTVGY NEYSRLIHPARNLSYKVALSPATYALNEVLVKPKREHYRKKDNPAVEFVRRMIEHRDDHSPNEKDFWQRDRYEKTTFALN NFDEEKQKKWLYRKFDFLTEYVDTSAVTGKPILTVSARELLATDYYRKSPHSEKQWVKGRKQAGVDEFLSKQGMQAAINE VFKDVDIYENNISLFTNKFVSPLSRIGTGFYKYYLMDTLQIGGETCADLAFTPFNSESFGFNGHLYVTLDSTYFVKRAVL NFPKKINLNFVDYMLLEQEFKRAEDGTRLLDHESITVEFKLTEGQDGIFARRVADYSHYSFLPTEEADKAFTKPERIIEE TEALSRPETFWAENRPQAAISQQENSVDRLMAQLRGYPVYYWTEKVLSILFTGYIPTSKEAPLFYIGPMNATISGNTLEG PRIRAGGMTTAWLNPHLFGKGYIAYGFKDERLKGLAEVEYSFKKKKEYANEFPIHSLKVRYESDVNQYGQNYLYTSKDNV FLALKREKDDRIGYYRQAEMSYTNEFYSGFSFQLTARRRTDESSYLIPFLRKDGEVYSPVKDFSTSAAELKLRYAPNEKF FQTQWNRFPVSLDAPVFTLSHTIAGKGVLGSDYTYNHTEAGIQKRFWFSAFGYTDIILKAGKVWDKVPFPLLIMPNANLS YTIQPESYSLMNAMEFMNDEYFSWDVTYFLNGWLFNRIPLLKKLKWREIVSCRGLYGHLSDKNNPDMTDGLFAFPIASTR TMGKTPYVEAGVGIENIFKVLRLDYVWRLTYRDSPDIDKSGLRISLHMTF
Sequences:
>Translated_850_residues MRLIIKGAVALFLLLAISIPLSAQYIVQGVVTDSLTREPLSYVSVRLKNTTEGTTTGSDGRFYFKTHRSEGVLVISTVGY NEYSRLIHPARNLSYKVALSPATYALNEVLVKPKREHYRKKDNPAVEFVRRMIEHRDDHSPNEKDFWQRDRYEKTTFALN NFDEEKQKKWLYRKFDFLTEYVDTSAVTGKPILTVSARELLATDYYRKSPHSEKQWVKGRKQAGVDEFLSKQGMQAAINE VFKDVDIYENNISLFTNKFVSPLSRIGTGFYKYYLMDTLQIGGETCADLAFTPFNSESFGFNGHLYVTLDSTYFVKRAVL NFPKKINLNFVDYMLLEQEFKRAEDGTRLLDHESITVEFKLTEGQDGIFARRVADYSHYSFLPTEEADKAFTKPERIIEE TEALSRPETFWAENRPQAAISQQENSVDRLMAQLRGYPVYYWTEKVLSILFTGYIPTSKEAPLFYIGPMNATISGNTLEG PRIRAGGMTTAWLNPHLFGKGYIAYGFKDERLKGLAEVEYSFKKKKEYANEFPIHSLKVRYESDVNQYGQNYLYTSKDNV FLALKREKDDRIGYYRQAEMSYTNEFYSGFSFQLTARRRTDESSYLIPFLRKDGEVYSPVKDFSTSAAELKLRYAPNEKF FQTQWNRFPVSLDAPVFTLSHTIAGKGVLGSDYTYNHTEAGIQKRFWFSAFGYTDIILKAGKVWDKVPFPLLIMPNANLS YTIQPESYSLMNAMEFMNDEYFSWDVTYFLNGWLFNRIPLLKKLKWREIVSCRGLYGHLSDKNNPDMTDGLFAFPIASTR TMGKTPYVEAGVGIENIFKVLRLDYVWRLTYRDSPDIDKSGLRISLHMTF >Mature_850_residues MRLIIKGAVALFLLLAISIPLSAQYIVQGVVTDSLTREPLSYVSVRLKNTTEGTTTGSDGRFYFKTHRSEGVLVISTVGY NEYSRLIHPARNLSYKVALSPATYALNEVLVKPKREHYRKKDNPAVEFVRRMIEHRDDHSPNEKDFWQRDRYEKTTFALN NFDEEKQKKWLYRKFDFLTEYVDTSAVTGKPILTVSARELLATDYYRKSPHSEKQWVKGRKQAGVDEFLSKQGMQAAINE VFKDVDIYENNISLFTNKFVSPLSRIGTGFYKYYLMDTLQIGGETCADLAFTPFNSESFGFNGHLYVTLDSTYFVKRAVL NFPKKINLNFVDYMLLEQEFKRAEDGTRLLDHESITVEFKLTEGQDGIFARRVADYSHYSFLPTEEADKAFTKPERIIEE TEALSRPETFWAENRPQAAISQQENSVDRLMAQLRGYPVYYWTEKVLSILFTGYIPTSKEAPLFYIGPMNATISGNTLEG PRIRAGGMTTAWLNPHLFGKGYIAYGFKDERLKGLAEVEYSFKKKKEYANEFPIHSLKVRYESDVNQYGQNYLYTSKDNV FLALKREKDDRIGYYRQAEMSYTNEFYSGFSFQLTARRRTDESSYLIPFLRKDGEVYSPVKDFSTSAAELKLRYAPNEKF FQTQWNRFPVSLDAPVFTLSHTIAGKGVLGSDYTYNHTEAGIQKRFWFSAFGYTDIILKAGKVWDKVPFPLLIMPNANLS YTIQPESYSLMNAMEFMNDEYFSWDVTYFLNGWLFNRIPLLKKLKWREIVSCRGLYGHLSDKNNPDMTDGLFAFPIASTR TMGKTPYVEAGVGIENIFKVLRLDYVWRLTYRDSPDIDKSGLRISLHMTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98374; Mature: 98374
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLIIKGAVALFLLLAISIPLSAQYIVQGVVTDSLTREPLSYVSVRLKNTTEGTTTGSDG CEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCCCCCCCC RFYFKTHRSEGVLVISTVGYNEYSRLIHPARNLSYKVALSPATYALNEVLVKPKREHYRK EEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCHHHCCC KDNPAVEFVRRMIEHRDDHSPNEKDFWQRDRYEKTTFALNNFDEEKQKKWLYRKFDFLTE CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHHHHHHH YVDTSAVTGKPILTVSARELLATDYYRKSPHSEKQWVKGRKQAGVDEFLSKQGMQAAINE HHCCCCCCCCCEEEECHHHHHHHHHHHCCCCCHHHHHCCHHHCCHHHHHHHCCHHHHHHH VFKDVDIYENNISLFTNKFVSPLSRIGTGFYKYYLMDTLQIGGETCADLAFTPFNSESFG HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEECCCCCCCCC FNGHLYVTLDSTYFVKRAVLNFPKKINLNFVDYMLLEQEFKRAEDGTRLLDHESITVEFK CCCEEEEEECCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCEEECCCEEEEEEE LTEGQDGIFARRVADYSHYSFLPTEEADKAFTKPERIIEETEALSRPETFWAENRPQAAI EECCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCCCHHH SQQENSVDRLMAQLRGYPVYYWTEKVLSILFTGYIPTSKEAPLFYIGPMNATISGNTLEG HHHCCHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEECCCCCCC PRIRAGGMTTAWLNPHLFGKGYIAYGFKDERLKGLAEVEYSFKKKKEYANEFPIHSLKVR CEEECCCEEEEECCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE YESDVNQYGQNYLYTSKDNVFLALKREKDDRIGYYRQAEMSYTNEFYSGFSFQLTARRRT EHHHHHHHCCCCEEECCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHCCCEEEEEEECCC DESSYLIPFLRKDGEVYSPVKDFSTSAAELKLRYAPNEKFFQTQWNRFPVSLDAPVFTLS CCCCEEEEEEECCCCCCCCHHHHCCCCEEEEEEECCCCCHHHHHCCCCCEEECCCEEEEE HTIAGKGVLGSDYTYNHTEAGIQKRFWFSAFGYTDIILKAGKVWDKVPFPLLIMPNANLS HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHCCCCCEEEECCCCEE YTIQPESYSLMNAMEFMNDEYFSWDVTYFLNGWLFNRIPLLKKLKWREIVSCRGLYGHLS EEECCCCHHHHHHHHHHCCCCEEEEEHEEECCHHHHCCHHHHHHHHHHHHHHCCCEEECC DKNNPDMTDGLFAFPIASTRTMGKTPYVEAGVGIENIFKVLRLDYVWRLTYRDSPDIDKS CCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHEEEEEECCCCCCCCC GLRISLHMTF CCEEEEEEEC >Mature Secondary Structure MRLIIKGAVALFLLLAISIPLSAQYIVQGVVTDSLTREPLSYVSVRLKNTTEGTTTGSDG CEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCCCCCCCC RFYFKTHRSEGVLVISTVGYNEYSRLIHPARNLSYKVALSPATYALNEVLVKPKREHYRK EEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCHHHCCC KDNPAVEFVRRMIEHRDDHSPNEKDFWQRDRYEKTTFALNNFDEEKQKKWLYRKFDFLTE CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHHHHHHH YVDTSAVTGKPILTVSARELLATDYYRKSPHSEKQWVKGRKQAGVDEFLSKQGMQAAINE HHCCCCCCCCCEEEECHHHHHHHHHHHCCCCCHHHHHCCHHHCCHHHHHHHCCHHHHHHH VFKDVDIYENNISLFTNKFVSPLSRIGTGFYKYYLMDTLQIGGETCADLAFTPFNSESFG HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEECCCCCCCCC FNGHLYVTLDSTYFVKRAVLNFPKKINLNFVDYMLLEQEFKRAEDGTRLLDHESITVEFK CCCEEEEEECCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCEEECCCEEEEEEE LTEGQDGIFARRVADYSHYSFLPTEEADKAFTKPERIIEETEALSRPETFWAENRPQAAI EECCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCCCHHH SQQENSVDRLMAQLRGYPVYYWTEKVLSILFTGYIPTSKEAPLFYIGPMNATISGNTLEG HHHCCHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEECCCCCCC PRIRAGGMTTAWLNPHLFGKGYIAYGFKDERLKGLAEVEYSFKKKKEYANEFPIHSLKVR CEEECCCEEEEECCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE YESDVNQYGQNYLYTSKDNVFLALKREKDDRIGYYRQAEMSYTNEFYSGFSFQLTARRRT EHHHHHHHCCCCEEECCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHCCCEEEEEEECCC DESSYLIPFLRKDGEVYSPVKDFSTSAAELKLRYAPNEKFFQTQWNRFPVSLDAPVFTLS CCCCEEEEEEECCCCCCCCHHHHCCCCEEEEEEECCCCCHHHHHCCCCCEEECCCEEEEE HTIAGKGVLGSDYTYNHTEAGIQKRFWFSAFGYTDIILKAGKVWDKVPFPLLIMPNANLS HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHCCCCCEEEECCCCEE YTIQPESYSLMNAMEFMNDEYFSWDVTYFLNGWLFNRIPLLKKLKWREIVSCRGLYGHLS EEECCCCHHHHHHHHHHCCCCEEEEEHEEECCHHHHCCHHHHHHHHHHHHHHCCCEEECC DKNNPDMTDGLFAFPIASTRTMGKTPYVEAGVGIENIFKVLRLDYVWRLTYRDSPDIDKS CCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHEEEEEECCCCCCCCC GLRISLHMTF CCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA