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The map label for this gene is ntrY [H]

Identifier: 29346938

GI number: 29346938

Start: 1884065

End: 1885357

Strand: Reverse

Name: ntrY [H]

Synonym: BT_1528

Alternate gene names: 29346938

Gene position: 1885357-1884065 (Counterclockwise)

Preceding gene: 29346939

Following gene: 29346937

Centisome position: 30.12

GC content: 48.49

Gene sequence:

>1293_bases
ATGCGTATAAAAGGATTTTTTGGTATACTCGTTTTCCTGCTTCTGGTCTTGGGGGGTGGATTGCTTTTCCTTTCAAGCCG
GTTGAACCTGATCTATTTCTATATAGGAGAGGGGTTGGTCCTTTTTATCCTGTGTTATCTCCCGTTTTTCTATCGTAAAA
TTGTGAAACCGCTGAACTCTATCGGAAGCGGTATGGAACTGTTGCGCGAACAGGATTTCAGCAGCCGGTTAAGTCCCGTG
GGGCAATATGAAGCCGACCGTATTGTGAACGTCTTCAACCGGATGATGGAGCAACTAAAGAATGAACGTCTCCGTCTTCG
CGAACAGAATAACTTCCTTGACCTGCTGATTAAAGCCTCTCCGATGGGAGTCATCCTCACCACATTGGACGAGGACCTTT
CCGAGCTGAACCCGATGGCGCAGAAAATGCTGGGTGTCCGTCAGGAAGATGTCTTGGGCAAAAAGATGAACGAGATAGAT
TCTCCGCTTGCCGCCGAGTTGGCAAATGTGCCGAAAGGAGAAACGGCTACCGTCCGTCTGAATGATTCGAATATTTATAG
ATGTACGCATTCCTCTTTTATTGACCGTGGATTTCAGCACCCCTTCTTCCTGATAGAAAGTCTGACGGACGAAGTGATGA
AGGCAGAGAAGAAAGCCTACGAGAAGGTGATCCGCATGATTGCCCACGAAGTGAACAACACTACTGCCGGAATAACCTCC
ACACTGGATACAGTAGAGCAGGCGCTTTCTGCCGAAGAAGGCATGGATGATATTTGCGATGTCATGCGTGTATGTATCGA
ACGCTGTTTCTCTATGAGCCGTTTCATCACCCGTTTTGCCGATGTAGTGAAGATTCCCGAACCGACGCTCACGCCTGTCG
ACCTGAATGACCTCGCATTTACCTGCAAGCGTTTTATGGAAGGTATGTGTGCCGACCGGAACATAAAACTTCGTCTGGAG
ATAGACGAAACACTGAAAGAGGTAAAAATGGATGCCTCCCTCTTCGAACAGGTACTGGTAAACATCATCAAGAATGCTGC
GGAAAGCATCGAAAAGGATGGCGAGATTATCGTCCGCACCCTTTCTCCTGCCACTATCGAAGTGGTGGACAACGGTAAGG
GAATCAGCAAAGAGGTGGAAGCGAAGCTGTTCAGCCCGTTCTTCTCCACCAAGCCCAATGGTCAGGGAATCGGACTGATC
TTTATCCGGGAGGTTCTGATGCGTCACGGCTGTACCTTCTCTCTGCGGACTTATGCCGACGGATTGACCAGATTCCGTAT
TCTTTTTCCTTGA

Upstream 100 bases:

>100_bases
GAGTCAGGTAGCTACAGCGCTTGGCATCAGTCGTGCCGCCCTTTACCGTCGTTTGGAGAAGTTTGGAATCAGTGTTTAGC
AGATAGACCTTACTATTATT

Downstream 100 bases:

>100_bases
TCAAATGTCAAACGAGAACAGTTCTTCCGCTATATAGACCTTTTTTTGTTCTGAAATCCCTCCTACCTTTGCCCCGCTCA
ATTCAATAGGATGTTAAGGT

Product: two-component system sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MRIKGFFGILVFLLLVLGGGLLFLSSRLNLIYFYIGEGLVLFILCYLPFFYRKIVKPLNSIGSGMELLREQDFSSRLSPV
GQYEADRIVNVFNRMMEQLKNERLRLREQNNFLDLLIKASPMGVILTTLDEDLSELNPMAQKMLGVRQEDVLGKKMNEID
SPLAAELANVPKGETATVRLNDSNIYRCTHSSFIDRGFQHPFFLIESLTDEVMKAEKKAYEKVIRMIAHEVNNTTAGITS
TLDTVEQALSAEEGMDDICDVMRVCIERCFSMSRFITRFADVVKIPEPTLTPVDLNDLAFTCKRFMEGMCADRNIKLRLE
IDETLKEVKMDASLFEQVLVNIIKNAAESIEKDGEIIVRTLSPATIEVVDNGKGISKEVEAKLFSPFFSTKPNGQGIGLI
FIREVLMRHGCTFSLRTYADGLTRFRILFP

Sequences:

>Translated_430_residues
MRIKGFFGILVFLLLVLGGGLLFLSSRLNLIYFYIGEGLVLFILCYLPFFYRKIVKPLNSIGSGMELLREQDFSSRLSPV
GQYEADRIVNVFNRMMEQLKNERLRLREQNNFLDLLIKASPMGVILTTLDEDLSELNPMAQKMLGVRQEDVLGKKMNEID
SPLAAELANVPKGETATVRLNDSNIYRCTHSSFIDRGFQHPFFLIESLTDEVMKAEKKAYEKVIRMIAHEVNNTTAGITS
TLDTVEQALSAEEGMDDICDVMRVCIERCFSMSRFITRFADVVKIPEPTLTPVDLNDLAFTCKRFMEGMCADRNIKLRLE
IDETLKEVKMDASLFEQVLVNIIKNAAESIEKDGEIIVRTLSPATIEVVDNGKGISKEVEAKLFSPFFSTKPNGQGIGLI
FIREVLMRHGCTFSLRTYADGLTRFRILFP
>Mature_430_residues
MRIKGFFGILVFLLLVLGGGLLFLSSRLNLIYFYIGEGLVLFILCYLPFFYRKIVKPLNSIGSGMELLREQDFSSRLSPV
GQYEADRIVNVFNRMMEQLKNERLRLREQNNFLDLLIKASPMGVILTTLDEDLSELNPMAQKMLGVRQEDVLGKKMNEID
SPLAAELANVPKGETATVRLNDSNIYRCTHSSFIDRGFQHPFFLIESLTDEVMKAEKKAYEKVIRMIAHEVNNTTAGITS
TLDTVEQALSAEEGMDDICDVMRVCIERCFSMSRFITRFADVVKIPEPTLTPVDLNDLAFTCKRFMEGMCADRNIKLRLE
IDETLKEVKMDASLFEQVLVNIIKNAAESIEKDGEIIVRTLSPATIEVVDNGKGISKEVEAKLFSPFFSTKPNGQGIGLI
FIREVLMRHGCTFSLRTYADGLTRFRILFP

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790436, Length=227, Percent_Identity=27.7533039647577, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788549, Length=407, Percent_Identity=24.0786240786241, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790300, Length=235, Percent_Identity=25.531914893617, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786783, Length=217, Percent_Identity=26.7281105990783, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 48740; Mature: 48740

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIKGFFGILVFLLLVLGGGLLFLSSRLNLIYFYIGEGLVLFILCYLPFFYRKIVKPLNS
CCCCHHHHHHHHHHHHHCCHHHHHHCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
IGSGMELLREQDFSSRLSPVGQYEADRIVNVFNRMMEQLKNERLRLREQNNFLDLLIKAS
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
PMGVILTTLDEDLSELNPMAQKMLGVRQEDVLGKKMNEIDSPLAAELANVPKGETATVRL
CCCEEHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEE
NDSNIYRCTHSSFIDRGFQHPFFLIESLTDEVMKAEKKAYEKVIRMIAHEVNNTTAGITS
CCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
TLDTVEQALSAEEGMDDICDVMRVCIERCFSMSRFITRFADVVKIPEPTLTPVDLNDLAF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
TCKRFMEGMCADRNIKLRLEIDETLKEVKMDASLFEQVLVNIIKNAAESIEKDGEIIVRT
HHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LSPATIEVVDNGKGISKEVEAKLFSPFFSTKPNGQGIGLIFIREVLMRHGCTFSLRTYAD
CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHC
GLTRFRILFP
CHHHEEEECC
>Mature Secondary Structure
MRIKGFFGILVFLLLVLGGGLLFLSSRLNLIYFYIGEGLVLFILCYLPFFYRKIVKPLNS
CCCCHHHHHHHHHHHHHCCHHHHHHCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
IGSGMELLREQDFSSRLSPVGQYEADRIVNVFNRMMEQLKNERLRLREQNNFLDLLIKAS
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
PMGVILTTLDEDLSELNPMAQKMLGVRQEDVLGKKMNEIDSPLAAELANVPKGETATVRL
CCCEEHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEE
NDSNIYRCTHSSFIDRGFQHPFFLIESLTDEVMKAEKKAYEKVIRMIAHEVNNTTAGITS
CCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
TLDTVEQALSAEEGMDDICDVMRVCIERCFSMSRFITRFADVVKIPEPTLTPVDLNDLAF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
TCKRFMEGMCADRNIKLRLEIDETLKEVKMDASLFEQVLVNIIKNAAESIEKDGEIIVRT
HHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LSPATIEVVDNGKGISKEVEAKLFSPFFSTKPNGQGIGLIFIREVLMRHGCTFSLRTYAD
CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHC
GLTRFRILFP
CHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]