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The map label for this gene is ykfC [H]

Identifier: 29346724

GI number: 29346724

Start: 1638918

End: 1639904

Strand: Reverse

Name: ykfC [H]

Synonym: BT_1314

Alternate gene names: 29346724

Gene position: 1639904-1638918 (Counterclockwise)

Preceding gene: 29346726

Following gene: 29346723

Centisome position: 26.2

GC content: 46.5

Gene sequence:

>987_bases
ATGAAGAAAAATATCCTTTTTTTCTATTGCTTGCTGGTAGTAGCAGTAGTTAGTCTGAAAGCTCAGGAAATACGCCCCAT
GCCTGCTGATTCAGCTTATGGGGTAGTACACATTTCTGTTTGTAATATGCGTGATGAAGGTAAGTTTACTTCCGGAATGA
GCACGCAGGCACTGCTTGGGATGCCGGTCAAGGTATTGCAATACACCGGCTGGTACGAGATTCAGACTCCGGATGACTAT
ACGGGATGGGTGCATCGGATGGTGATTACGCCGATGTCGAAAGAGAAATATGATGAATGGAACCGTGCAGAGAAGATTGT
GGTGACTTCCCACTACGGATTTACGTATGAAAAACCGGATGACGACTCGCAGACCGTATCGGATGTTGTTGCTGGCAATC
GCCTGAAGTGGGAGGGAAGTAAAGGGCATTTTTACAAGGTGTCTTATCCGGATGGCCGCCAGGCTTATATCTCCAGACAT
ATTTCACAACCAGAGAGTAAATGGAGAGCTTCGTTGAAACAAGATGCTGAAAGTATTATTAAAACTGCTTATACAATGAT
CGGAATTCCCTATCTGTGGGCAGGGACTTCTTCGAAAGGAGTTGATTGCAGCGGGCTGGTCCGGACCGTACTCTTTATGC
ATGATATTATCATCCCAAGAGATGCGTCACAACAGGCTTATGTAGGCGAACGTATTGAGATAGCCCCTGATTTCTCCAAC
GTGCAACGCGGAGACCTCGTCTTCTTCGGTCGTAAAGCTACAGCCGACCGTAAAGAAGGCATCTCACACGTCGGCATCTA
CCTGGGTAATAAACGCTTCATCCATGCCTTGGGAGACGTACATATCAGCAGCTTTGATCCCGAAGACGAGTGCTACGATG
AGTTCAACACCGGTCGTCTGCTTTTTGCCACTCGCTTCCTGCCCTATATAAATAAGGAGAAAGGTATGAATACCACCGAC
CATAACCTCTATTATCTACATCACTAA

Upstream 100 bases:

>100_bases
GCTTTAGACTGCAAAAGTACGTCATTTATTTTGTTTTAGCCAAAGAAAGTGTCACAAATAGAAATAATTTCTACCTTTGC
TATCATTAAATCATGATTCA

Downstream 100 bases:

>100_bases
CCATTATCCATTAAACAAATGCCAAATAGAAGAGATTTTCTGAAAACGGCTGCCTTTGCGACTTTAGGTTCCGGAATAGC
TGTCAGTCAGGTATTGGCGG

Product: dipeptidyl-peptidase VI

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKKNILFFYCLLVVAVVSLKAQEIRPMPADSAYGVVHISVCNMRDEGKFTSGMSTQALLGMPVKVLQYTGWYEIQTPDDY
TGWVHRMVITPMSKEKYDEWNRAEKIVVTSHYGFTYEKPDDDSQTVSDVVAGNRLKWEGSKGHFYKVSYPDGRQAYISRH
ISQPESKWRASLKQDAESIIKTAYTMIGIPYLWAGTSSKGVDCSGLVRTVLFMHDIIIPRDASQQAYVGERIEIAPDFSN
VQRGDLVFFGRKATADRKEGISHVGIYLGNKRFIHALGDVHISSFDPEDECYDEFNTGRLLFATRFLPYINKEKGMNTTD
HNLYYLHH

Sequences:

>Translated_328_residues
MKKNILFFYCLLVVAVVSLKAQEIRPMPADSAYGVVHISVCNMRDEGKFTSGMSTQALLGMPVKVLQYTGWYEIQTPDDY
TGWVHRMVITPMSKEKYDEWNRAEKIVVTSHYGFTYEKPDDDSQTVSDVVAGNRLKWEGSKGHFYKVSYPDGRQAYISRH
ISQPESKWRASLKQDAESIIKTAYTMIGIPYLWAGTSSKGVDCSGLVRTVLFMHDIIIPRDASQQAYVGERIEIAPDFSN
VQRGDLVFFGRKATADRKEGISHVGIYLGNKRFIHALGDVHISSFDPEDECYDEFNTGRLLFATRFLPYINKEKGMNTTD
HNLYYLHH
>Mature_328_residues
MKKNILFFYCLLVVAVVSLKAQEIRPMPADSAYGVVHISVCNMRDEGKFTSGMSTQALLGMPVKVLQYTGWYEIQTPDDY
TGWVHRMVITPMSKEKYDEWNRAEKIVVTSHYGFTYEKPDDDSQTVSDVVAGNRLKWEGSKGHFYKVSYPDGRQAYISRH
ISQPESKWRASLKQDAESIIKTAYTMIGIPYLWAGTSSKGVDCSGLVRTVLFMHDIIIPRDASQQAYVGERIEIAPDFSN
VQRGDLVFFGRKATADRKEGISHVGIYLGNKRFIHALGDVHISSFDPEDECYDEFNTGRLLFATRFLPYINKEKGMNTTD
HNLYYLHH

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=90, Percent_Identity=43.3333333333333, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 37414; Mature: 37414

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNILFFYCLLVVAVVSLKAQEIRPMPADSAYGVVHISVCNMRDEGKFTSGMSTQALLG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHC
MPVKVLQYTGWYEIQTPDDYTGWVHRMVITPMSKEKYDEWNRAEKIVVTSHYGFTYEKPD
CCHHHEEECCEEEECCCCCHHHHEEEEEECCCCHHHHHHHCCCCEEEEEEECCEEECCCC
DDSQTVSDVVAGNRLKWEGSKGHFYKVSYPDGRQAYISRHISQPESKWRASLKQDAESII
CCHHHHHHHHCCCEEEEECCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KTAYTMIGIPYLWAGTSSKGVDCSGLVRTVLFMHDIIIPRDASQQAYVGERIEIAPDFSN
HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCC
VQRGDLVFFGRKATADRKEGISHVGIYLGNKRFIHALGDVHISSFDPEDECYDEFNTGRL
CCCCCEEEECCCCCCHHHCCCCEEEEEECCCEEEEEECCEEECCCCCCHHHHHHCCCCEE
LFATRFLPYINKEKGMNTTDHNLYYLHH
EEEEHHHHHHHHCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MKKNILFFYCLLVVAVVSLKAQEIRPMPADSAYGVVHISVCNMRDEGKFTSGMSTQALLG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHC
MPVKVLQYTGWYEIQTPDDYTGWVHRMVITPMSKEKYDEWNRAEKIVVTSHYGFTYEKPD
CCHHHEEECCEEEECCCCCHHHHEEEEEECCCCHHHHHHHCCCCEEEEEEECCEEECCCC
DDSQTVSDVVAGNRLKWEGSKGHFYKVSYPDGRQAYISRHISQPESKWRASLKQDAESII
CCHHHHHHHHCCCEEEEECCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KTAYTMIGIPYLWAGTSSKGVDCSGLVRTVLFMHDIIIPRDASQQAYVGERIEIAPDFSN
HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCC
VQRGDLVFFGRKATADRKEGISHVGIYLGNKRFIHALGDVHISSFDPEDECYDEFNTGRL
CCCCCEEEECCCCCCHHHCCCCEEEEEECCCEEEEEECCEEECCCCCCHHHHHHCCCCEE
LFATRFLPYINKEKGMNTTDHNLYYLHH
EEEEHHHHHHHHCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]