| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is tgt [H]
Identifier: 29346245
GI number: 29346245
Start: 1030316
End: 1031446
Strand: Reverse
Name: tgt [H]
Synonym: BT_0835
Alternate gene names: 29346245
Gene position: 1031446-1030316 (Counterclockwise)
Preceding gene: 29346246
Following gene: 29346244
Centisome position: 16.48
GC content: 45.98
Gene sequence:
>1131_bases ATGACATTTGAGTTACAATATACAGACACTAAAAGTAATGCCCGTGCAGGTCTGATAACAACAGACCACGGGCAGATACA AACACCTATCTTCATGCCTGTGGGAACACTGGGCACTGTTAAAGGAGTACATGTAACAGAACTGAAAGAAGATATCCAGG CACAGATTATTCTGGGCAACACCTATCATTTATACTTGCGTCCGGGACTAGACGTAATTGAAAAGGCAGGCGGACTGCAT CGCTTCAATGGTTTTGATCGTCCTATGCTGACCGATAGCGGTGGTTTTCAGGTATTCTCATTAGCAGGAATACGAAAACT TCGGGAAGAAGGAGCCGAATTCCGCTCGCACATTGATGGCAGCAAACATATCTTTACCCCGGAAAAGGTGATGGATATAG AACGTACCATTGGCGCTGATATCATGATGGCTTTTGACGAATGTCCTCCGGGAGATTCAGATTATGCATATGCCAAAAAG TCATTAGGGCTGACACACAGATGGCTTGATCGTTGTATTCAGCGTTTTAACGAAACTGAACCGAAATACGGCTACAACCA GTCTCTCTTCCCCATCGTGCAAGGATGTGTTTATCAGGATTTGCGTAAGCAATCCGCTGAATTCGTCGCCTCCAAAGGAG CGGATGGAAATGCAATCGGTGGACTGGCCGTAGGCGAACCGGTAGATAAGATGTACGAGATGATAGAGGTTGTCAACGAG ATTCTTCCCAAAGACAAGCCCCGCTATCTGATGGGAGTCGGTACCCCCGTAAATATCCTTGAAGGCATTGAACGCGGAGT CGATATGTTCGACTGTGTTATGCCTACCCGAAACGGACGAAATGGCATGCTGTTTACCAAAGACGGTATCATCAATATGC GAAACAAGAAATGGGAAACAGACTTCTCTCCCATCGAGGCAGACGGTGCTTCTGCTGTAGACACGTTATACAGCAAAGCG TACTTGCGTCACCTTTTCCACGCACAAGAACTACTGGCAATGCAAATTGCTTCTATACACAATCTGGCATTTTACCTGTG GCTGGTAGGTGAAGCCCGGAAACATATCATTGCCGGAGATTTCTCTACCTGGAAGCCGATGATGGTAAAAAGAGTGTCAA CAAGATTATAA
Upstream 100 bases:
>100_bases TCCACTATGTAAACGACATTAAAGAAGTATTCGCAATCGCCTTGACAAACGAGAAAGTTGCGGATGCCATTGATTTATCT GTAAAGAAACCCAGCCAGGA
Downstream 100 bases:
>100_bases AGAATGAAAAGCAATCGATTAATAAAACGGCTGGATTGGTATATCATCAAGAAATTCTTGGGGACATACGTATTTGCCAT TGCATTGATTATCTCAATTG
Product: tRNA-guanine transglycosylase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MTFELQYTDTKSNARAGLITTDHGQIQTPIFMPVGTLGTVKGVHVTELKEDIQAQIILGNTYHLYLRPGLDVIEKAGGLH RFNGFDRPMLTDSGGFQVFSLAGIRKLREEGAEFRSHIDGSKHIFTPEKVMDIERTIGADIMMAFDECPPGDSDYAYAKK SLGLTHRWLDRCIQRFNETEPKYGYNQSLFPIVQGCVYQDLRKQSAEFVASKGADGNAIGGLAVGEPVDKMYEMIEVVNE ILPKDKPRYLMGVGTPVNILEGIERGVDMFDCVMPTRNGRNGMLFTKDGIINMRNKKWETDFSPIEADGASAVDTLYSKA YLRHLFHAQELLAMQIASIHNLAFYLWLVGEARKHIIAGDFSTWKPMMVKRVSTRL
Sequences:
>Translated_376_residues MTFELQYTDTKSNARAGLITTDHGQIQTPIFMPVGTLGTVKGVHVTELKEDIQAQIILGNTYHLYLRPGLDVIEKAGGLH RFNGFDRPMLTDSGGFQVFSLAGIRKLREEGAEFRSHIDGSKHIFTPEKVMDIERTIGADIMMAFDECPPGDSDYAYAKK SLGLTHRWLDRCIQRFNETEPKYGYNQSLFPIVQGCVYQDLRKQSAEFVASKGADGNAIGGLAVGEPVDKMYEMIEVVNE ILPKDKPRYLMGVGTPVNILEGIERGVDMFDCVMPTRNGRNGMLFTKDGIINMRNKKWETDFSPIEADGASAVDTLYSKA YLRHLFHAQELLAMQIASIHNLAFYLWLVGEARKHIIAGDFSTWKPMMVKRVSTRL >Mature_375_residues TFELQYTDTKSNARAGLITTDHGQIQTPIFMPVGTLGTVKGVHVTELKEDIQAQIILGNTYHLYLRPGLDVIEKAGGLHR FNGFDRPMLTDSGGFQVFSLAGIRKLREEGAEFRSHIDGSKHIFTPEKVMDIERTIGADIMMAFDECPPGDSDYAYAKKS LGLTHRWLDRCIQRFNETEPKYGYNQSLFPIVQGCVYQDLRKQSAEFVASKGADGNAIGGLAVGEPVDKMYEMIEVVNEI LPKDKPRYLMGVGTPVNILEGIERGVDMFDCVMPTRNGRNGMLFTKDGIINMRNKKWETDFSPIEADGASAVDTLYSKAY LRHLFHAQELLAMQIASIHNLAFYLWLVGEARKHIIAGDFSTWKPMMVKRVSTRL
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=352, Percent_Identity=39.4886363636364, Blast_Score=271, Evalue=1e-72, Organism=Escherichia coli, GI1786607, Length=364, Percent_Identity=48.0769230769231, Blast_Score=344, Evalue=5e-96, Organism=Caenorhabditis elegans, GI17544680, Length=344, Percent_Identity=37.5, Blast_Score=230, Evalue=1e-60, Organism=Caenorhabditis elegans, GI25146502, Length=125, Percent_Identity=30.4, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI19920510, Length=364, Percent_Identity=40.3846153846154, Blast_Score=287, Evalue=7e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 42224; Mature: 42093
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFELQYTDTKSNARAGLITTDHGQIQTPIFMPVGTLGTVKGVHVTELKEDIQAQIILGN CEEEEEECCCCCCCCCCEEECCCCCEECCEEEECCCCCCCCCCHHHHHHHCCEEEEEECC TYHLYLRPGLDVIEKAGGLHRFNGFDRPMLTDSGGFQVFSLAGIRKLREEGAEFRSHIDG EEEEEECCCHHHHHHCCCCCCCCCCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHCCC SKHIFTPEKVMDIERTIGADIMMAFDECPPGDSDYAYAKKSLGLTHRWLDRCIQRFNETE CCEEECHHHHHHHHHHHCHHHEEHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCC PKYGYNQSLFPIVQGCVYQDLRKQSAEFVASKGADGNAIGGLAVGEPVDKMYEMIEVVNE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH ILPKDKPRYLMGVGTPVNILEGIERGVDMFDCVMPTRNGRNGMLFTKDGIINMRNKKWET HCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEECCCEEECCCCCCCC DFSPIEADGASAVDTLYSKAYLRHLFHAQELLAMQIASIHNLAFYLWLVGEARKHIIAGD CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECC FSTWKPMMVKRVSTRL CCCCHHHHHHHHHHCC >Mature Secondary Structure TFELQYTDTKSNARAGLITTDHGQIQTPIFMPVGTLGTVKGVHVTELKEDIQAQIILGN EEEEEECCCCCCCCCCEEECCCCCEECCEEEECCCCCCCCCCHHHHHHHCCEEEEEECC TYHLYLRPGLDVIEKAGGLHRFNGFDRPMLTDSGGFQVFSLAGIRKLREEGAEFRSHIDG EEEEEECCCHHHHHHCCCCCCCCCCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHCCC SKHIFTPEKVMDIERTIGADIMMAFDECPPGDSDYAYAKKSLGLTHRWLDRCIQRFNETE CCEEECHHHHHHHHHHHCHHHEEHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCC PKYGYNQSLFPIVQGCVYQDLRKQSAEFVASKGADGNAIGGLAVGEPVDKMYEMIEVVNE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH ILPKDKPRYLMGVGTPVNILEGIERGVDMFDCVMPTRNGRNGMLFTKDGIINMRNKKWET HCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEECCCEEECCCCCCCC DFSPIEADGASAVDTLYSKAYLRHLFHAQELLAMQIASIHNLAFYLWLVGEARKHIIAGD CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECC FSTWKPMMVKRVSTRL CCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA