| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29345860
Identifier: 29345860
GI number: 29345860
Start: 548886
End: 550583
Strand: Reverse
Name: 29345860
Synonym: BT_0450
Alternate gene names: NA
Gene position: 550583-548886 (Counterclockwise)
Preceding gene: 29345861
Following gene: 29345859
Centisome position: 8.79
GC content: 40.81
Gene sequence:
>1698_bases ATGAAAAAGAATATACAATATTTACTATTAGGAGTATTGGCATTAATGAGTTCCTGCCAAGATCCGGAATATGTACTTCC AACTGCTGAGCGGCAGGGAATCACAAGCTTGACCGCACTTTTTACATCAGGTCCTTATGTGGACAAAGAAGCTGTTGTCT ACACAATTGCGGATGCGTCTGTAGATAAATATGTGATTCCTATACCATGGTTTTATCCGGAAGACAGTGAAAATGAAACG GCGGAATATATGAAGACAATGAGGGTCCAGGCAAAGTTAGCTCCTAACTGTACTATTAACCCTGTTTTGACGATATTGGA TTTGACTAAAGAAAATTACTTCACTTATACAGATGCGCAGGGATATAAGAAACAAATCTGCATTACGGGTGAAAGAGTGA AATCCAATAAATGTCAGTTATTAAGTTTCTCAATACCGGCCGAAGATATTAGTGGAATTATTGACGAAGAGCATAAGACG GTATCTCTGATTTCTGCAGAAGATTTATCTTCCTGTCTGGCAGAATATTCACTTTCCTCTCATGCGACAATGTCGCCGGA TCCTAAGACAGAGGCGCTTGACTTCAATTCACCTGTAGAACTGACGGTCATCGCTCACGATGGAGTGACGAAGCAGACGT ACACAGTTCAGAAGGCAGTGCCGGATAAGATCCCTTATGGATATAGAAAAGGCAGTGAGACAGAATTGTTTAAATTGGAT ATGGGAGTTATAGGTTTGCCCTGGACTTCAGCCAACTCACCTTCACTGGCCGTTAATGGCAATAATTTAGTTGTTTGCTT AGGGGACGGTTCTACTGCTCCTACCTATTATAATGCTTCTACAGGAAGTAAGATTGGCAATATGACTTTGGGAAGCGTAG GTGTTGCATCTTTAGGTTGTGTGACAAGTGATAGTAAAGGAAACATATTGTTGGCAACAAAAGCAGCTAATGGTAAATCC TTCTCTATCTATAAGACTTCTTCTGTAACCACAGTTCCAACTTTATTGATATCTTATACCAACAATACAAGTTTGGATAT GGGTACCAAAGTATCTGTACAGGGTGATATCAATACAAATGCCGCTATCATTGCTACATGTGACGGGACAGCCTCGTCCG GTTCTAATACGTTTGTTCGCTGGATTATAACAGACGGTGTATTGGGAAGTCCTGAAGTAGTATCGGTAAATGGTGTTGGC TATTGGGGATCTCCTGTGTCAAATACCAAGGTTGTCACCAAAGGAACTACTGCACAAAGCGATTATTTCTTATCCTATTA TGATCCTAACGTACTTTATTGGGTGAATGGAACAAGTAATAATGCGTCCAAGTCTTTATCCAATTCGGACAATGGCAATT CCTGGGCAATGAATAATAACTGTCTGGATGCAAGAACGTTCAATAATGCGCAGTATCTTGTATTGGTATCTACGGCTCAC TTCCCGCAATGGGGAGGCACTCCGTACTTATATATGTACGATGTAACCTCAGACGGATCGTTTACCGGTACGGTATCTAC TTCAGACGCTTTGACATTCAATCCTTCACTTTCTTCGTTCGGTTCTGCAGATGGTGTAGCGGCAACAGGTGATGTATTGT TTGCTCCAACTACAGATGGATATAAACTTCGTCTCTACTATGTTGACAACAACTGTAAGATTATCGGAGGGTATGAATTT GATTGTATCGACAAATAA
Upstream 100 bases:
>100_bases ACTAAGATGTACCGTTTCCCTATGCCACAGGCGGAGTTGGACAATAACGGTGCGGTAACTCAATATGCAGAATGGCAATA AATCTAAAATGAAAACAATT
Downstream 100 bases:
>100_bases TTAATGTGTTTCAAAAGAGTTACTGACATTAATAAACATATATAATATGAGAAATCTTTTTAAAATATTATTATTGACGT TTTGCGGAATGGTTGCTATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MKKNIQYLLLGVLALMSSCQDPEYVLPTAERQGITSLTALFTSGPYVDKEAVVYTIADASVDKYVIPIPWFYPEDSENET AEYMKTMRVQAKLAPNCTINPVLTILDLTKENYFTYTDAQGYKKQICITGERVKSNKCQLLSFSIPAEDISGIIDEEHKT VSLISAEDLSSCLAEYSLSSHATMSPDPKTEALDFNSPVELTVIAHDGVTKQTYTVQKAVPDKIPYGYRKGSETELFKLD MGVIGLPWTSANSPSLAVNGNNLVVCLGDGSTAPTYYNASTGSKIGNMTLGSVGVASLGCVTSDSKGNILLATKAANGKS FSIYKTSSVTTVPTLLISYTNNTSLDMGTKVSVQGDINTNAAIIATCDGTASSGSNTFVRWIITDGVLGSPEVVSVNGVG YWGSPVSNTKVVTKGTTAQSDYFLSYYDPNVLYWVNGTSNNASKSLSNSDNGNSWAMNNNCLDARTFNNAQYLVLVSTAH FPQWGGTPYLYMYDVTSDGSFTGTVSTSDALTFNPSLSSFGSADGVAATGDVLFAPTTDGYKLRLYYVDNNCKIIGGYEF DCIDK
Sequences:
>Translated_565_residues MKKNIQYLLLGVLALMSSCQDPEYVLPTAERQGITSLTALFTSGPYVDKEAVVYTIADASVDKYVIPIPWFYPEDSENET AEYMKTMRVQAKLAPNCTINPVLTILDLTKENYFTYTDAQGYKKQICITGERVKSNKCQLLSFSIPAEDISGIIDEEHKT VSLISAEDLSSCLAEYSLSSHATMSPDPKTEALDFNSPVELTVIAHDGVTKQTYTVQKAVPDKIPYGYRKGSETELFKLD MGVIGLPWTSANSPSLAVNGNNLVVCLGDGSTAPTYYNASTGSKIGNMTLGSVGVASLGCVTSDSKGNILLATKAANGKS FSIYKTSSVTTVPTLLISYTNNTSLDMGTKVSVQGDINTNAAIIATCDGTASSGSNTFVRWIITDGVLGSPEVVSVNGVG YWGSPVSNTKVVTKGTTAQSDYFLSYYDPNVLYWVNGTSNNASKSLSNSDNGNSWAMNNNCLDARTFNNAQYLVLVSTAH FPQWGGTPYLYMYDVTSDGSFTGTVSTSDALTFNPSLSSFGSADGVAATGDVLFAPTTDGYKLRLYYVDNNCKIIGGYEF DCIDK >Mature_565_residues MKKNIQYLLLGVLALMSSCQDPEYVLPTAERQGITSLTALFTSGPYVDKEAVVYTIADASVDKYVIPIPWFYPEDSENET AEYMKTMRVQAKLAPNCTINPVLTILDLTKENYFTYTDAQGYKKQICITGERVKSNKCQLLSFSIPAEDISGIIDEEHKT VSLISAEDLSSCLAEYSLSSHATMSPDPKTEALDFNSPVELTVIAHDGVTKQTYTVQKAVPDKIPYGYRKGSETELFKLD MGVIGLPWTSANSPSLAVNGNNLVVCLGDGSTAPTYYNASTGSKIGNMTLGSVGVASLGCVTSDSKGNILLATKAANGKS FSIYKTSSVTTVPTLLISYTNNTSLDMGTKVSVQGDINTNAAIIATCDGTASSGSNTFVRWIITDGVLGSPEVVSVNGVG YWGSPVSNTKVVTKGTTAQSDYFLSYYDPNVLYWVNGTSNNASKSLSNSDNGNSWAMNNNCLDARTFNNAQYLVLVSTAH FPQWGGTPYLYMYDVTSDGSFTGTVSTSDALTFNPSLSSFGSADGVAATGDVLFAPTTDGYKLRLYYVDNNCKIIGGYEF DCIDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60697; Mature: 60697
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNIQYLLLGVLALMSSCQDPEYVLPTAERQGITSLTALFTSGPYVDKEAVVYTIADAS CCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEHHHCCCCCCCCCEEEEEEECCC VDKYVIPIPWFYPEDSENETAEYMKTMRVQAKLAPNCTINPVLTILDLTKENYFTYTDAQ CCCEEEECCEECCCCCCCHHHHHHHHHEEEEEECCCCCCCCEEEEEEECCCCEEEEECCC GYKKQICITGERVKSNKCQLLSFSIPAEDISGIIDEEHKTVSLISAEDLSSCLAEYSLSS CCEEEEEEECCCCCCCCEEEEEEECCHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCC HATMSPDPKTEALDFNSPVELTVIAHDGVTKQTYTVQKAVPDKIPYGYRKGSETELFKLD CCCCCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEHHCCCCCCCCCCCCCCCCEEEEEE MGVIGLPWTSANSPSLAVNGNNLVVCLGDGSTAPTYYNASTGSKIGNMTLGSVGVASLGC CCEEECCCCCCCCCEEEECCCEEEEEECCCCCCCEEEECCCCCCCCCEEECCCCCEEEEE VTSDSKGNILLATKAANGKSFSIYKTSSVTTVPTLLISYTNNTSLDMGTKVSVQGDINTN EECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCC AAIIATCDGTASSGSNTFVRWIITDGVLGSPEVVSVNGVGYWGSPVSNTKVVTKGTTAQS EEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCEECCCCCCCEEEEECCCCCC DYFLSYYDPNVLYWVNGTSNNASKSLSNSDNGNSWAMNNNCLDARTFNNAQYLVLVSTAH CEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEEEECC FPQWGGTPYLYMYDVTSDGSFTGTVSTSDALTFNPSLSSFGSADGVAATGDVLFAPTTDG CCCCCCCCEEEEEEECCCCCEEEEEECCCEEEECCCHHHCCCCCCCEECCCEEEEECCCC YKLRLYYVDNNCKIIGGYEFDCIDK EEEEEEEECCCEEEEECCEEEECCC >Mature Secondary Structure MKKNIQYLLLGVLALMSSCQDPEYVLPTAERQGITSLTALFTSGPYVDKEAVVYTIADAS CCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEHHHCCCCCCCCCEEEEEEECCC VDKYVIPIPWFYPEDSENETAEYMKTMRVQAKLAPNCTINPVLTILDLTKENYFTYTDAQ CCCEEEECCEECCCCCCCHHHHHHHHHEEEEEECCCCCCCCEEEEEEECCCCEEEEECCC GYKKQICITGERVKSNKCQLLSFSIPAEDISGIIDEEHKTVSLISAEDLSSCLAEYSLSS CCEEEEEEECCCCCCCCEEEEEEECCHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCC HATMSPDPKTEALDFNSPVELTVIAHDGVTKQTYTVQKAVPDKIPYGYRKGSETELFKLD CCCCCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEHHCCCCCCCCCCCCCCCCEEEEEE MGVIGLPWTSANSPSLAVNGNNLVVCLGDGSTAPTYYNASTGSKIGNMTLGSVGVASLGC CCEEECCCCCCCCCEEEECCCEEEEEECCCCCCCEEEECCCCCCCCCEEECCCCCEEEEE VTSDSKGNILLATKAANGKSFSIYKTSSVTTVPTLLISYTNNTSLDMGTKVSVQGDINTN EECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCC AAIIATCDGTASSGSNTFVRWIITDGVLGSPEVVSVNGVGYWGSPVSNTKVVTKGTTAQS EEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCEECCCCCCCEEEEECCCCCC DYFLSYYDPNVLYWVNGTSNNASKSLSNSDNGNSWAMNNNCLDARTFNNAQYLVLVSTAH CEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEEEECC FPQWGGTPYLYMYDVTSDGSFTGTVSTSDALTFNPSLSSFGSADGVAATGDVLFAPTTDG CCCCCCCCEEEEEEECCCCCEEEEEECCCEEEECCCHHHCCCCCCCEECCCEEEEECCCC YKLRLYYVDNNCKIIGGYEFDCIDK EEEEEEEECCCEEEEECCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA