| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29345771
Identifier: 29345771
GI number: 29345771
Start: 433972
End: 435777
Strand: Reverse
Name: 29345771
Synonym: BT_0361
Alternate gene names: NA
Gene position: 435777-433972 (Counterclockwise)
Preceding gene: 29345772
Following gene: 29345770
Centisome position: 6.96
GC content: 51.05
Gene sequence:
>1806_bases ATGAAAAGAATATCAACTTATATAGTTACTCTGGTCCTCGCACTCGCAGGCAGTTCGTGCAGCGACTACCTCGACAAAGA GTACGATGCCTCCTTATCTGAAAAGAAAGTGTTCAATAACCAGAACCTGACACGCGAGTTCCTCGCCAACATCTACACGA ATCTGCCGGACGGACTGGCGCCACTGTCGGACGACCAGTTCACAGGTGCTTCACGTGACTGTATGACGGATAATGCAGTG ACCTGCTGGGGACTTCATTATTATACAAAGATCGGCAGCGACGGATACACCGCCGGCGACCATCCCCTGCTGGGCTTCTG GAACACCGACTTATACGGGATTCGGAAATGTAATATGTTTCTGAAGAACGCCAAGGCATCCGTAGTAGGAAATACGGAGA AAGACGGCGATGACAACCGCCTTTACGACCGTTACTGTGCAGAAGCCAGACTGCTTCGCGCTATCTTCCATTTCGACTTA ATCTGCTGGTTCGGCGCTGCCCCTGTCATTGCGGAAGATGAATCCGGCGAACCGATCATCTTCGACTTGTCCGATCCTTC GGCAATGAACATGTTCCGTACTCCCGCTGCCGAAGCACTTGAATGGGTAGCCGACCAATGCGACCAGATCAAAAACCAGC TCCCTTTCCGCTACAGCGATGAAGCATCCAACTGGGGACGTGTCAACGGAGCCGCCGCTTATGCTTTAAAGGCAAGAGCC CTGCTCTACCGTGCTTCCAAACTGAACAATCCGGACGGCAACACCGCATACTGGGCGAATGCGGCGCAGGCAGCAGCCGA CTTCATCACTCAGAATAACAAGCAAAGTTACCCTTACCGACTGTACAATACGGGAAATCCGGAGAATGACTATTACGAAT GTTTCACGACCAATCCGGTATACAACAATGAAATTATCCTTGCACGCTCTGTATGGAATACCAATCAGGTAGAAAAAGTA TTCCTGCCGGTAGGCTTTACCGGTTCTTTCTCCGGAAACGGACGTACCAACCCGACACAGAATCTGGTGGACGCTTACGA AATGAGCAACGGCAAACGGATCGATGAGAACGGCAGTACCTACGATGCCGCCAATCCGTATAAAGACCGTGACCCGCGTC TGGCACAAACCATCTTCTATCAAGGCATGATGTGGGGACGTGCCGACAAAGAAGAAAGACGTGCCATCGACGTACGCTAC AACTCGGATGCGGACAAAGGAGTGGATTACACCTCAGCCATGGGAGGCACCTACACCGGATACTATCTGAAAAAGTTCGT GAATAACATTTCCTGCAAAGAACCGGCCACCTATCCTCACGCATGGATGATTTTCCGTTATGGCGAAATTCTGCTGAATG CCGCCGAAGCCTATAATGAAGCGGAAGGTCCTGCCAAGGCATACAGTTACATCAATGAGGTACGCGCCCGTGCCGGTATG CCGGCCTACGCAGATATGTCGCAAAGTGAACTCCGCGAACGTATCCGCAACGAGAGACGCATCGAACTGGCTTTCGAAGA TCATCGTTTCTTCGATGTACGCCGCTGGAAACTATATGACAATGTAACCTCTACGGGAGAAACCGGAAAGCCCCGTTACA ACCAGTTGCTGAATCTTTATGGAGTGAAGGTCACCGGCAACGCAGATACTCCCTCCTATACCTTCGGACTGGCAGAAACG GTCAATTCACGCACGTTTGTCAATCCCAAGAGTTACTATTTCCCGATACCTGCCAACGAAGTGAAACGGGCACCCAATCT GGGACAGAATCCGGGATGGGACACCGGAAGCGCTTCTAACGAATAA
Upstream 100 bases:
>100_bases GAAAACCCGACCAACTATATCTGGGCATATCCCAAGACACGTTCATTTACGTTCGGTGTGAATATCGGATTCTAATCATT CAATAAAACAGCAAAGAATT
Downstream 100 bases:
>100_bases ACATCAAAACAATCTAAAAAAGAAAGACTGAGATATGAAATACTTAAAGACCATCTATCTTCTACTCTGTTGCACGCTCG CTCTGGCAGCGTGCAGCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein; Lipoprotein; Ragb/Susd Domain Protein; RagB/SusD Family Protein; Liporotein
Number of amino acids: Translated: 601; Mature: 601
Protein sequence:
>601_residues MKRISTYIVTLVLALAGSSCSDYLDKEYDASLSEKKVFNNQNLTREFLANIYTNLPDGLAPLSDDQFTGASRDCMTDNAV TCWGLHYYTKIGSDGYTAGDHPLLGFWNTDLYGIRKCNMFLKNAKASVVGNTEKDGDDNRLYDRYCAEARLLRAIFHFDL ICWFGAAPVIAEDESGEPIIFDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFRYSDEASNWGRVNGAAAYALKARA LLYRASKLNNPDGNTAYWANAAQAAADFITQNNKQSYPYRLYNTGNPENDYYECFTTNPVYNNEIILARSVWNTNQVEKV FLPVGFTGSFSGNGRTNPTQNLVDAYEMSNGKRIDENGSTYDAANPYKDRDPRLAQTIFYQGMMWGRADKEERRAIDVRY NSDADKGVDYTSAMGGTYTGYYLKKFVNNISCKEPATYPHAWMIFRYGEILLNAAEAYNEAEGPAKAYSYINEVRARAGM PAYADMSQSELRERIRNERRIELAFEDHRFFDVRRWKLYDNVTSTGETGKPRYNQLLNLYGVKVTGNADTPSYTFGLAET VNSRTFVNPKSYYFPIPANEVKRAPNLGQNPGWDTGSASNE
Sequences:
>Translated_601_residues MKRISTYIVTLVLALAGSSCSDYLDKEYDASLSEKKVFNNQNLTREFLANIYTNLPDGLAPLSDDQFTGASRDCMTDNAV TCWGLHYYTKIGSDGYTAGDHPLLGFWNTDLYGIRKCNMFLKNAKASVVGNTEKDGDDNRLYDRYCAEARLLRAIFHFDL ICWFGAAPVIAEDESGEPIIFDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFRYSDEASNWGRVNGAAAYALKARA LLYRASKLNNPDGNTAYWANAAQAAADFITQNNKQSYPYRLYNTGNPENDYYECFTTNPVYNNEIILARSVWNTNQVEKV FLPVGFTGSFSGNGRTNPTQNLVDAYEMSNGKRIDENGSTYDAANPYKDRDPRLAQTIFYQGMMWGRADKEERRAIDVRY NSDADKGVDYTSAMGGTYTGYYLKKFVNNISCKEPATYPHAWMIFRYGEILLNAAEAYNEAEGPAKAYSYINEVRARAGM PAYADMSQSELRERIRNERRIELAFEDHRFFDVRRWKLYDNVTSTGETGKPRYNQLLNLYGVKVTGNADTPSYTFGLAET VNSRTFVNPKSYYFPIPANEVKRAPNLGQNPGWDTGSASNE >Mature_601_residues MKRISTYIVTLVLALAGSSCSDYLDKEYDASLSEKKVFNNQNLTREFLANIYTNLPDGLAPLSDDQFTGASRDCMTDNAV TCWGLHYYTKIGSDGYTAGDHPLLGFWNTDLYGIRKCNMFLKNAKASVVGNTEKDGDDNRLYDRYCAEARLLRAIFHFDL ICWFGAAPVIAEDESGEPIIFDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFRYSDEASNWGRVNGAAAYALKARA LLYRASKLNNPDGNTAYWANAAQAAADFITQNNKQSYPYRLYNTGNPENDYYECFTTNPVYNNEIILARSVWNTNQVEKV FLPVGFTGSFSGNGRTNPTQNLVDAYEMSNGKRIDENGSTYDAANPYKDRDPRLAQTIFYQGMMWGRADKEERRAIDVRY NSDADKGVDYTSAMGGTYTGYYLKKFVNNISCKEPATYPHAWMIFRYGEILLNAAEAYNEAEGPAKAYSYINEVRARAGM PAYADMSQSELRERIRNERRIELAFEDHRFFDVRRWKLYDNVTSTGETGKPRYNQLLNLYGVKVTGNADTPSYTFGLAET VNSRTFVNPKSYYFPIPANEVKRAPNLGQNPGWDTGSASNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67857; Mature: 67857
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRISTYIVTLVLALAGSSCSDYLDKEYDASLSEKKVFNNQNLTREFLANIYTNLPDGLA CCHHHHHHHHHHHHHHCCCHHHHHCHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCC PLSDDQFTGASRDCMTDNAVTCWGLHYYTKIGSDGYTAGDHPLLGFWNTDLYGIRKCNMF CCCCCCCCCCCCCCCCCCCEEEEEEEEHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHH LKNAKASVVGNTEKDGDDNRLYDRYCAEARLLRAIFHFDLICWFGAAPVIAEDESGEPII HHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEE FDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFRYSDEASNWGRVNGAAAYALKARA EECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHH LLYRASKLNNPDGNTAYWANAAQAAADFITQNNKQSYPYRLYNTGNPENDYYECFTTNPV HHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCC YNNEIILARSVWNTNQVEKVFLPVGFTGSFSGNGRTNPTQNLVDAYEMSNGKRIDENGST CCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCC YDAANPYKDRDPRLAQTIFYQGMMWGRADKEERRAIDVRYNSDADKGVDYTSAMGGTYTG CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCEEEEEECCCCCCCCCHHHHCCCCHHH YYLKKFVNNISCKEPATYPHAWMIFRYGEILLNAAEAYNEAEGPAKAYSYINEVRARAGM HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC PAYADMSQSELRERIRNERRIELAFEDHRFFDVRRWKLYDNVTSTGETGKPRYNQLLNLY CCHHCCCHHHHHHHHCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHE GVKVTGNADTPSYTFGLAETVNSRTFVNPKSYYFPIPANEVKRAPNLGQNPGWDTGSASN EEEEECCCCCCCEEEHHHHHCCCCEEECCCCEEECCCHHHHHCCCCCCCCCCCCCCCCCC E C >Mature Secondary Structure MKRISTYIVTLVLALAGSSCSDYLDKEYDASLSEKKVFNNQNLTREFLANIYTNLPDGLA CCHHHHHHHHHHHHHHCCCHHHHHCHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCC PLSDDQFTGASRDCMTDNAVTCWGLHYYTKIGSDGYTAGDHPLLGFWNTDLYGIRKCNMF CCCCCCCCCCCCCCCCCCCEEEEEEEEHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHH LKNAKASVVGNTEKDGDDNRLYDRYCAEARLLRAIFHFDLICWFGAAPVIAEDESGEPII HHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEE FDLSDPSAMNMFRTPAAEALEWVADQCDQIKNQLPFRYSDEASNWGRVNGAAAYALKARA EECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHH LLYRASKLNNPDGNTAYWANAAQAAADFITQNNKQSYPYRLYNTGNPENDYYECFTTNPV HHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCC YNNEIILARSVWNTNQVEKVFLPVGFTGSFSGNGRTNPTQNLVDAYEMSNGKRIDENGST CCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCC YDAANPYKDRDPRLAQTIFYQGMMWGRADKEERRAIDVRYNSDADKGVDYTSAMGGTYTG CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCEEEEEECCCCCCCCCHHHHCCCCHHH YYLKKFVNNISCKEPATYPHAWMIFRYGEILLNAAEAYNEAEGPAKAYSYINEVRARAGM HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC PAYADMSQSELRERIRNERRIELAFEDHRFFDVRRWKLYDNVTSTGETGKPRYNQLLNLY CCHHCCCHHHHHHHHCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHE GVKVTGNADTPSYTFGLAETVNSRTFVNPKSYYFPIPANEVKRAPNLGQNPGWDTGSASN EEEEECCCCCCCEEEHHHHHCCCCEEECCCCEEECCCHHHHHCCCCCCCCCCCCCCCCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA