| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29345675
Identifier: 29345675
GI number: 29345675
Start: 296627
End: 298108
Strand: Reverse
Name: 29345675
Synonym: BT_0265
Alternate gene names: NA
Gene position: 298108-296627 (Counterclockwise)
Preceding gene: 29345676
Following gene: 29345674
Centisome position: 4.76
GC content: 37.85
Gene sequence:
>1482_bases ATGAGAATAACTCTATTTATCTGCTTTATGTTCTCATTCACCTCTATTTTTTCACAAAACACCCAGATCAGTCCGGGTGT TTTGTGGAATGACATAGATGGGGAGCAAATTAACGCACACGGTGGATGTGTCGTTTACGAAAAAGGAACTTATTATTGGT TTGGAGAAGATCGTACAGGTTTTAAATCAAATGGGGTAAGTTGTTATCAATCTAAAGACTTATACAACTGGAAACGGCTG GGGTTGTCGATGAAAACGACAGGTGAAGCCAGAGAAGACATGAATGATATATCGCAGGGACGTTTGTTCGAACGTCCCAA AGTAATTTATAATCCCCAAACTAAGAAATGGGTAATGTGGAGCCATTGGGAAAGTGGAGATGGATATGGAGCTGCACGTG TTTGTGTAGCAACAAGCGATAAAATAATGGGGCCTTATGTACTTTACAAAACATTTCGCCCTAATAAAAACGAGTCCCGT GATCAGACGTTATTCGTAGATACAGACGGAAAAGCATATCATTTCTGTTCTACGGATATGAATACCAACATGAATATTGC ATTACTTAGAGACGATTATCTGGAGCCGACTCCAACAGAAACTAAAATTTTAAAGGGACTTAAATATGAGGCACCCGCTA TTTTTAAGGTTGGGGATATGTATTTTGGATTGTTTTCCGGTTGCACAGGCTGGGAACCCAATCCCGGGAGAAGTGCCTAC AGTACTGATATACTGGGGAACTGGACAACAGGGAACAATTTTGCTGTAGATAAACTCAAACAAGTTACTTACAACTCACA AAGCTGTTATGTATTTAAAGTGGAGGGTAAAGAAAAAGCTTATATATACATGGGTGACCGTTGGAACTCTAAGGATGTAG GAAAGTCTCATCATGTGTGGTTGCCCATTAGTATGCGCTCAGGCTATCCTGTCGTAAAATGGTATGATCAATGGGATTTA ACCGTGTTTAATAGTATGTATCGCTATAAAAGAGCTGCAGAAATCATACCCGGTAATATATACTCATTATTAGAAAAGAC CTCTGATCGTTTAGTGTCTAAACCTGCCAATGGTTTCAGTATAGCGGATGATGATGATGACATCAATCTAAGTCTGGAGT TTATAAAGACTAATATACCCAACGTATATAAAATAAAAGATACCAAAACCGGAAAGTTTTTGGAATCACTGTTCGGAACT TTACGCCTGAATCCCGAGAAGAAAGATGATGCTCAATGCTGGGTGTTCAACCTACAGGAAGATGGTTATTATCAGATACA AAATCTGAAAGATAAGAAGTATGTTACAGTTTCCGGTTCAAATACATTTGCCGGAAGTAATTTATATCTTACTGAACTAT CCAAGAAGTTAATGCAAGATTTTGCAGTATATTTCGATTCCAATAAATATAAATATAAGGAAGCAGATATATTCTCTGAT GCCTACAAGGCTAATAATCTAAAACAGATGAAAGCCCAATAA
Upstream 100 bases:
>100_bases TACTGCTGATGTGGAATATTTCACAATTGACGAATCTGGAGCCTATGCCCCTGCACAGCCCGAAATAACTATTAATATTG AAGACTAAAATAACGAAAAC
Downstream 100 bases:
>100_bases ATTTCTCATATGTAATTCTGATAAATTAAATTTGTTACATTATGAACATAAAAAGCCAACAGGCAAAAAATAGTTTTTTA TTCATATTTATATATCTATG
Product: hypothetical protein
Products: NA
Alternate protein names: Beta-Xylosidase; Glycoside Hydrolase Family; Ricin B Lectin; Family; Licheninase; Glycosyl Hydrolase Family; Coagulation Factor 5/8 Type Domain Protein; S-Layer Domain Protein; Glycoside Hydrolase Family Beta-Glycosidase; Xylosidase/Arabinofuranosidase; Ricin-Type Beta-Trefoil Lectin Domain Protein; Cna B Domain Protein; Beta-Galactosidase
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MRITLFICFMFSFTSIFSQNTQISPGVLWNDIDGEQINAHGGCVVYEKGTYYWFGEDRTGFKSNGVSCYQSKDLYNWKRL GLSMKTTGEAREDMNDISQGRLFERPKVIYNPQTKKWVMWSHWESGDGYGAARVCVATSDKIMGPYVLYKTFRPNKNESR DQTLFVDTDGKAYHFCSTDMNTNMNIALLRDDYLEPTPTETKILKGLKYEAPAIFKVGDMYFGLFSGCTGWEPNPGRSAY STDILGNWTTGNNFAVDKLKQVTYNSQSCYVFKVEGKEKAYIYMGDRWNSKDVGKSHHVWLPISMRSGYPVVKWYDQWDL TVFNSMYRYKRAAEIIPGNIYSLLEKTSDRLVSKPANGFSIADDDDDINLSLEFIKTNIPNVYKIKDTKTGKFLESLFGT LRLNPEKKDDAQCWVFNLQEDGYYQIQNLKDKKYVTVSGSNTFAGSNLYLTELSKKLMQDFAVYFDSNKYKYKEADIFSD AYKANNLKQMKAQ
Sequences:
>Translated_493_residues MRITLFICFMFSFTSIFSQNTQISPGVLWNDIDGEQINAHGGCVVYEKGTYYWFGEDRTGFKSNGVSCYQSKDLYNWKRL GLSMKTTGEAREDMNDISQGRLFERPKVIYNPQTKKWVMWSHWESGDGYGAARVCVATSDKIMGPYVLYKTFRPNKNESR DQTLFVDTDGKAYHFCSTDMNTNMNIALLRDDYLEPTPTETKILKGLKYEAPAIFKVGDMYFGLFSGCTGWEPNPGRSAY STDILGNWTTGNNFAVDKLKQVTYNSQSCYVFKVEGKEKAYIYMGDRWNSKDVGKSHHVWLPISMRSGYPVVKWYDQWDL TVFNSMYRYKRAAEIIPGNIYSLLEKTSDRLVSKPANGFSIADDDDDINLSLEFIKTNIPNVYKIKDTKTGKFLESLFGT LRLNPEKKDDAQCWVFNLQEDGYYQIQNLKDKKYVTVSGSNTFAGSNLYLTELSKKLMQDFAVYFDSNKYKYKEADIFSD AYKANNLKQMKAQ >Mature_493_residues MRITLFICFMFSFTSIFSQNTQISPGVLWNDIDGEQINAHGGCVVYEKGTYYWFGEDRTGFKSNGVSCYQSKDLYNWKRL GLSMKTTGEAREDMNDISQGRLFERPKVIYNPQTKKWVMWSHWESGDGYGAARVCVATSDKIMGPYVLYKTFRPNKNESR DQTLFVDTDGKAYHFCSTDMNTNMNIALLRDDYLEPTPTETKILKGLKYEAPAIFKVGDMYFGLFSGCTGWEPNPGRSAY STDILGNWTTGNNFAVDKLKQVTYNSQSCYVFKVEGKEKAYIYMGDRWNSKDVGKSHHVWLPISMRSGYPVVKWYDQWDL TVFNSMYRYKRAAEIIPGNIYSLLEKTSDRLVSKPANGFSIADDDDDINLSLEFIKTNIPNVYKIKDTKTGKFLESLFGT LRLNPEKKDDAQCWVFNLQEDGYYQIQNLKDKKYVTVSGSNTFAGSNLYLTELSKKLMQDFAVYFDSNKYKYKEADIFSD AYKANNLKQMKAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56780; Mature: 56780
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRITLFICFMFSFTSIFSQNTQISPGVLWNDIDGEQINAHGGCVVYEKGTYYWFGEDRTG CEEEEEEHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCEEEEECCEEEEECCCCCC FKSNGVSCYQSKDLYNWKRLGLSMKTTGEAREDMNDISQGRLFERPKVIYNPQTKKWVMW CCCCCEEEEECCCCCCHHHHCEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEE SHWESGDGYGAARVCVATSDKIMGPYVLYKTFRPNKNESRDQTLFVDTDGKAYHFCSTDM EECCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCC NTNMNIALLRDDYLEPTPTETKILKGLKYEAPAIFKVGDMYFGLFSGCTGWEPNPGRSAY CCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCE STDILGNWTTGNNFAVDKLKQVTYNSQSCYVFKVEGKEKAYIYMGDRWNSKDVGKSHHVW ECCCEECCCCCCCCHHHHHHHHEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEE LPISMRSGYPVVKWYDQWDLTVFNSMYRYKRAAEIIPGNIYSLLEKTSDRLVSKPANGFS EEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCE IADDDDDINLSLEFIKTNIPNVYKIKDTKTGKFLESLFGTLRLNPEKKDDAQCWVFNLQE ECCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHEEECCCCCCCCEEEEEEECC DGYYQIQNLKDKKYVTVSGSNTFAGSNLYLTELSKKLMQDFAVYFDSNKYKYKEADIFSD CCEEEEECCCCCEEEEEECCCEECCCCEEHHHHHHHHHHHHEEEECCCCEEEEHHHHHHH AYKANNLKQMKAQ HHHCCCCHHHCCC >Mature Secondary Structure MRITLFICFMFSFTSIFSQNTQISPGVLWNDIDGEQINAHGGCVVYEKGTYYWFGEDRTG CEEEEEEHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCEEEEECCEEEEECCCCCC FKSNGVSCYQSKDLYNWKRLGLSMKTTGEAREDMNDISQGRLFERPKVIYNPQTKKWVMW CCCCCEEEEECCCCCCHHHHCEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEE SHWESGDGYGAARVCVATSDKIMGPYVLYKTFRPNKNESRDQTLFVDTDGKAYHFCSTDM EECCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCC NTNMNIALLRDDYLEPTPTETKILKGLKYEAPAIFKVGDMYFGLFSGCTGWEPNPGRSAY CCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCE STDILGNWTTGNNFAVDKLKQVTYNSQSCYVFKVEGKEKAYIYMGDRWNSKDVGKSHHVW ECCCEECCCCCCCCHHHHHHHHEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEE LPISMRSGYPVVKWYDQWDLTVFNSMYRYKRAAEIIPGNIYSLLEKTSDRLVSKPANGFS EEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCE IADDDDDINLSLEFIKTNIPNVYKIKDTKTGKFLESLFGTLRLNPEKKDDAQCWVFNLQE ECCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHEEECCCCCCCCEEEEEEECC DGYYQIQNLKDKKYVTVSGSNTFAGSNLYLTELSKKLMQDFAVYFDSNKYKYKEADIFSD CCEEEEECCCCCEEEEEECCCEECCCCEEHHHHHHHHHHHHEEEECCCCEEEEHHHHHHH AYKANNLKQMKAQ HHHCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA