Definition Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession NC_004663
Length 6,260,361

Click here to switch to the map view.

The map label for this gene is 29345641

Identifier: 29345641

GI number: 29345641

Start: 252110

End: 252481

Strand: Reverse

Name: 29345641

Synonym: BT_0231

Alternate gene names: NA

Gene position: 252481-252110 (Counterclockwise)

Preceding gene: 29345642

Following gene: 29345640

Centisome position: 4.03

GC content: 48.92

Gene sequence:

>372_bases
ATGAATAAGGAATTAACTTTCAACGACCTTCCAATGGTCGTTGCCCAGCTTCGGGACGAAGTGGTGGGCATGAAGCAGAT
GATCGTCAGTCTGCAATCACAGAACAAGCCACACAAGGCTAATACGCACATACCTATGAGTGTGGAGGAAGCATCGGCAT
ACCTGAAAATGCCGATGGCAACTCTCTACATGAAACTTGGTAACGGCAGCATTCCTGCCACCAAGCCAGGCAAACGTTAC
TGCCTCTATCAGGATGAACTTGACAAGTGGCTGGAGACTAACCGCAAGAATCCTGTACCTCTTACGGCAGAGGAAGAGAA
CGCAGCCATTCTTGCAGGAAACAAGCGCAAGCCGAAACCCTTAAACTGGTAA

Upstream 100 bases:

>100_bases
GTTAGAGTTAATCCTTCGTGAATGACAAATGACTGTCACGAACCTCAGTAACGGAAGCATCATTCTGTTCCTTTGCACCA
GTTATTAACAAAGTATCAGA

Downstream 100 bases:

>100_bases
TGTCATGGATGCGCTTGAACTCTGTAATAAAATCAACATGGAAGCCGAGTCTTTAGCGGACTCAGGCTTCCCTCTTGAGG
TATTTCCACAAAAAATGCAG

Product: excisionase

Products: NA

Alternate protein names: Mobilizable Transposon Xis Protein; Excisionase In Mobilizable Transposon; Excisionase In Mobilizable Transposon Xis Protein

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MNKELTFNDLPMVVAQLRDEVVGMKQMIVSLQSQNKPHKANTHIPMSVEEASAYLKMPMATLYMKLGNGSIPATKPGKRY
CLYQDELDKWLETNRKNPVPLTAEEENAAILAGNKRKPKPLNW

Sequences:

>Translated_123_residues
MNKELTFNDLPMVVAQLRDEVVGMKQMIVSLQSQNKPHKANTHIPMSVEEASAYLKMPMATLYMKLGNGSIPATKPGKRY
CLYQDELDKWLETNRKNPVPLTAEEENAAILAGNKRKPKPLNW
>Mature_123_residues
MNKELTFNDLPMVVAQLRDEVVGMKQMIVSLQSQNKPHKANTHIPMSVEEASAYLKMPMATLYMKLGNGSIPATKPGKRY
CLYQDELDKWLETNRKNPVPLTAEEENAAILAGNKRKPKPLNW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13939; Mature: 13939

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKELTFNDLPMVVAQLRDEVVGMKQMIVSLQSQNKPHKANTHIPMSVEEASAYLKMPMA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
TLYMKLGNGSIPATKPGKRYCLYQDELDKWLETNRKNPVPLTAEEENAAILAGNKRKPKP
HHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCC
LNW
CCC
>Mature Secondary Structure
MNKELTFNDLPMVVAQLRDEVVGMKQMIVSLQSQNKPHKANTHIPMSVEEASAYLKMPMA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
TLYMKLGNGSIPATKPGKRYCLYQDELDKWLETNRKNPVPLTAEEENAAILAGNKRKPKP
HHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCC
LNW
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA