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The map label for this gene is cydC [C]

Identifier: 29345482

GI number: 29345482

Start: 69352

End: 69603

Strand: Reverse

Name: cydC [C]

Synonym: BT_0072

Alternate gene names: 29345482

Gene position: 69603-69352 (Counterclockwise)

Preceding gene: 29345483

Following gene: 29345481

Centisome position: 1.11

GC content: 60.71

Gene sequence:

>252_bases
ATGGGAACGGGCATAAGTGAGGGGCAGGCGCAACGCATAGCCATCGCGCGCGGACTGCTCCGCCCCGGTAACATCGTCCT
GCTGGACGAGCCCACCTCCTCGCTGGATTCCGATACCGAACGGACGCTGCTGGAACGGCTTTCACATACCATTCAAGGCA
AGACCCTCATCATTATCACCCACCAGGAACAGACGGCACGGCTCTGTAACGCCGTTATCAGGATGCATCCGGTGGGCTCC
CCCGGCAAGTGA

Upstream 100 bases:

>100_bases
ATCCCGAAGCTACCGACGGGCAGATGCGGGAAGCGTTGCATACGGCGGCGGCCGATTTTGTACGGGAACTGCCGCAAGGA
CTGGACACCCCTGCGGCGAG

Downstream 100 bases:

>100_bases
CGCCTACGTGAGACTGCGGGATGGCCGGGAACGGGGCCGATCGCGCAGGTATAAAACAAAAGCAGGGAAGTCCGGGGCTT
ATCCCGGCTTCCCTGCCGAC

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MGTGISEGQAQRIAIARGLLRPGNIVLLDEPTSSLDSDTERTLLERLSHTIQGKTLIIITHQEQTARLCNAVIRMHPVGS
PGK

Sequences:

>Translated_83_residues
MGTGISEGQAQRIAIARGLLRPGNIVLLDEPTSSLDSDTERTLLERLSHTIQGKTLIIITHQEQTARLCNAVIRMHPVGS
PGK
>Mature_82_residues
GTGISEGQAQRIAIARGLLRPGNIVLLDEPTSSLDSDTERTLLERLSHTIQGKTLIIITHQEQTARLCNAVIRMHPVGSP
GK

Specific function: Somehow Involved In The Cytochrome D Branch Of Aerobic Respiration. Seems To Be A Component Of A Transport System. [C]

COG id: COG1132

COG function: function code V; ABC-type multidrug transport system, ATPase and permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9961250, Length=72, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI4505771, Length=72, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI9961252, Length=72, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI42741659, Length=72, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI156105685, Length=74, Percent_Identity=40.5405405405405, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=75, Percent_Identity=45.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=75, Percent_Identity=45.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17511077, Length=72, Percent_Identity=44.4444444444444, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=75, Percent_Identity=45.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=74, Percent_Identity=47.2972972972973, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=64, Percent_Identity=48.4375, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=72, Percent_Identity=43.0555555555556, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=74, Percent_Identity=45.945945945946, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=74, Percent_Identity=44.5945945945946, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=64, Percent_Identity=50, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115535101, Length=61, Percent_Identity=52.4590163934426, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=61, Percent_Identity=52.4590163934426, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=61, Percent_Identity=52.4590163934426, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=66, Percent_Identity=46.969696969697, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24659289, Length=71, Percent_Identity=45.0704225352113, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017940
- InterPro:   IPR001140
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 8984; Mature: 8852

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTGISEGQAQRIAIARGLLRPGNIVLLDEPTSSLDSDTERTLLERLSHTIQGKTLIIIT
CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
HQEQTARLCNAVIRMHPVGSPGK
CCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GTGISEGQAQRIAIARGLLRPGNIVLLDEPTSSLDSDTERTLLERLSHTIQGKTLIIIT
CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
HQEQTARLCNAVIRMHPVGSPGK
CCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]