Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 29144182

GI number: 29144182

Start: 4046464

End: 4047366

Strand: Reverse

Name: yhjC [H]

Synonym: t3910

Alternate gene names: 29144182

Gene position: 4047366-4046464 (Counterclockwise)

Preceding gene: 29144184

Following gene: 29144181

Centisome position: 84.46

GC content: 54.04

Gene sequence:

>903_bases
ATGATGGATAAAATATATGCAATGAAATTGTTTGTGCGCGTGGCGGAACGGGAAAGTTTTTCCCGCGCAGCAGAAGATAT
CGGCCTTCCCAAAGGCAGCGTCTCACGGCAAATACAAGCGTTAGAACATCAACTGGGCATCCGCCTGCTCCACCGCACCA
CCCGGCGGGTACAGCTTACTCAGGACGGGATGGTTTACTACGAACGGGCAAAAGATCTGTTGAGTAACCTGGATGAACTG
GAGGGTCTTTTCCAGCCTGATCCCGCCAGTATCAGCGGCAAAATACGGGTAGATATCCCGCCAGGTCTCGCAAACAGCCT
TATCATGCCGCGCCTGCTCACTTTTTTGCATCAGTATCCCGGCATTGCGCTGGAACTTTGTAGTAGCGATCGACAGGTCG
ATTTACTACGGGAAGATTTCGACTGTGTGGTGCGCACAGAGCCGCTACATGCGCCAGGGATACTGACGCGCCCGCTTGGC
AAACTAAGAAGGGTGAACTGCGCCAGCCCACAATACCTGGCGCGCTTTGGATATCCAGAAAACCTTGACGACCTCGCCTC
ACATGCGATGGTGCATTATTCATTGACCCCGGGAGTCTCTTCACCGGGTTTTGCCTTCGAAACTCCCCACGGTATGCAGT
GGGTAAAAACCGGCGGAATGCTAACGGTAAACAGTACGGAGACCTGGCATACGGCCTGTCTGGCAGGATTAGGGATCATT
CAGACGCCGCGCATTGCTGTACGGGAGGCGTTACGCGCCGGAGCGCTCATTGAAATTTTACCGCAATATCGCGCCGCTCC
ACTGCCGGTGACGCTGCATTATCCCCATCGCCGTAATCTTTCCCGCCGGGTACACCTGTTTATGGTATGGCTGACTGAAA
CCATTAAAGAGGCCGCAGAGTAG

Upstream 100 bases:

>100_bases
ACGCGAGCAATGATTGCGAAAGGGCTTATTAGATGCTAGAAAATCAATAAAACCAGCCGCTTCAGCGTCACTGTTTCAAT
AAAAACAATAATAGAGCCTG

Downstream 100 bases:

>100_bases
CCGCATTTTCAGCATCCACCGGGGAGAAGCTATACTGACATATTCTATTAATGATGAAGGACTACCGACCTGATGACGCA
GGAAAATGACGTAAAACGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDEL
EGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLG
KLRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
QTPRIAVREALRAGALIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE

Sequences:

>Translated_300_residues
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDEL
EGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLG
KLRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
QTPRIAVREALRAGALIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
>Mature_300_residues
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDEL
EGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLG
KLRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
QTPRIAVREALRAGALIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=66.5540540540541, Blast_Score=400, Evalue=1e-113,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=31.1643835616438, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=28.5714285714286, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=31.5789473684211, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789440, Length=281, Percent_Identity=28.8256227758007, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=27.8350515463918, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=26.1324041811847, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789173, Length=186, Percent_Identity=32.258064516129, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=22.1122112211221, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=30.3225806451613, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=176, Percent_Identity=28.9772727272727, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788481, Length=267, Percent_Identity=26.9662921348315, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790399, Length=145, Percent_Identity=29.6551724137931, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=168, Percent_Identity=36.3095238095238, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786713, Length=279, Percent_Identity=27.5985663082437, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790783, Length=258, Percent_Identity=27.1317829457364, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33725; Mature: 33725

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEC
QDGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
GIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPE
CCEEEECCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCC
NLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
CHHHHHHHHEEEEEECCCCCCCCCEEECCCCCCEEECCCEEEECCCCHHHHHHHHCCCCC
QTPRIAVREALRAGALIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
CCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEC
QDGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
GIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPE
CCEEEECCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCC
NLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGII
CHHHHHHHHEEEEEECCCCCCCCCEEECCCCCCEEECCCEEEECCCCHHHHHHHHCCCCC
QTPRIAVREALRAGALIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
CCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]