Click here to switch to the map view.

The map label for this gene is yhjD [H]

Identifier: 29144181

GI number: 29144181

Start: 4045363

End: 4046391

Strand: Reverse

Name: yhjD [H]

Synonym: t3909

Alternate gene names: 29144181

Gene position: 4046391-4045363 (Counterclockwise)

Preceding gene: 29144182

Following gene: 29144180

Centisome position: 84.44

GC content: 51.12

Gene sequence:

>1029_bases
ATGACGCAGGAAAATGACGTAAAACGCCCTATTCAGGAACTGGAGCACGACCCGATACAAAAAATAGAAACGCAGCCGCA
TGACGCCCCGGAAAAAAACGAAAAGGCAAATCAGGCGTTGCATTCCGTCACCACCCTGATGCAAAAAATACAGCGTCAAC
CGATGGTGGCCCACCTCATTCGCGCGACCGAACGTTTTAACGATCGACTGGGTAATCAGTTTGGCGCGGCTATCACCTAC
TTTTCGTTTCTGTCGATGATCCCGATAATGATGGTGTCCTTTGCCGCGGCAGGTTTTATCCTCGCCTCGCACCCTAATCT
ACTGGAAGATATTTTCAGCAAGATATTGATGAATGTGAGCGATCCTACGCTGGCGTCCACGCTTAAAAATACGATTAATA
CGGCGGTTCAACAGCGTACCACGGTAGGGCTGGTCGGACTGGGTATCGCGCTCTATTCCGGCGTTAACTGGATGGGCAAC
CTGCGGGAAGCGATTCGCGCCCAGTCACGGGACGTCTGGGAGCGCAAGCCGCAGGATCAGGAGAAAATCTGGCTCAAATA
TCTGCGCGATTTTATCTCGCTGATTGGATTATTAATCGCTTTAATCATTACGCTGTCCATTACTTCCATCGCCGGTTCCG
CCCAGCAGATGATCATCTCCGCCTTGTATCTCGACAGCATCGAATGGTTAAAACCGGCCTGGCATTTGATCGGTCTGGCC
ATCTCTATTTTTGCCAACTATCTGCTTTTCTTCTGGATTTTCTGGCGACTGCCTCGCCATCGTCCCCGTAAAAAAGCGTT
GATTCGCGGGACATTTATCGCCGCTATCGGTTTTGAGGTGATTAAAATCATTATGACTTATACGCTGCCGTCACTGGTGA
AATCGCCTTCCGGCGCGGCGTTTGGCTCCGTACTCGGTCTGATGGCATTCTTCTACTTTTTTGCCCGCCTGACGTTATTC
TGCGCGGCCTGGATAGCCACCGCCGAATATAAGGACGACCCGCGAATGCCGGGTAAAACGCAACGCTAG

Upstream 100 bases:

>100_bases
TGAAACCATTAAAGAGGCCGCAGAGTAGCCGCATTTTCAGCATCCACCGGGGAGAAGCTATACTGACATATTCTATTAAT
GATGAAGGACTACCGACCTG

Downstream 100 bases:

>100_bases
TCTGCGGCTTGCTGCCGAATGGCACGCACGGCGTCGTCATTCGGCCTACTGCTGTATGGACCCAGGCCAGGTATGTAAAG
CGTACCCGGCGGTACAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTTLMQKIQRQPMVAHLIRATERFNDRLGNQFGAAITY
FSFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGN
LREAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLA
ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLF
CAAWIATAEYKDDPRMPGKTQR

Sequences:

>Translated_342_residues
MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTTLMQKIQRQPMVAHLIRATERFNDRLGNQFGAAITY
FSFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGN
LREAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLA
ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLF
CAAWIATAEYKDDPRMPGKTQR
>Mature_341_residues
TQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTTLMQKIQRQPMVAHLIRATERFNDRLGNQFGAAITYF
SFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGNL
REAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLAI
SIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLFC
AAWIATAEYKDDPRMPGKTQR

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=341, Percent_Identity=85.6304985337243, Blast_Score=613, Evalue=1e-177,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 38731; Mature: 38600

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTTLMQKIQRQPMVAHLI
CCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RATERFNDRLGNQFGAAITYFSFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
DPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGNLREAIRAQSRDVWERKPQDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHH
EKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
FGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVTTLMQKIQRQPMVAHLI
CCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RATERFNDRLGNQFGAAITYFSFLSMIPIMMVSFAAAGFILASHPNLLEDIFSKILMNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
DPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGNLREAIRAQSRDVWERKPQDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHH
EKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMIISALYLDSIEWLKPAWHLIGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAIGFEVIKIIMTYTLPSLVKSPSGAA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
FGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]