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The map label for this gene is yiaD [H]

Identifier: 29144150

GI number: 29144150

Start: 4000454

End: 4001116

Strand: Reverse

Name: yiaD [H]

Synonym: t3874

Alternate gene names: 29144150

Gene position: 4001116-4000454 (Counterclockwise)

Preceding gene: 29144152

Following gene: 29144149

Centisome position: 83.5

GC content: 59.28

Gene sequence:

>663_bases
ATGAAAAAACGTGTATTTGTGATTGCTGCCATCGTGAGCGGCGCCCTGGCAGTATCTGGCTGCACAACAAACCCTTACAC
CGGCGAACGCGAAGCAGGTAAATCCGGCATTGGCGCGGGTATTGGATCGCTGGTCGGCGCAGGCATCGGCGCGCTCTCCT
CCTCCAAAAAAGATCGCGGTAAAGGCGCGCTGATTGGCGCGGCGGCTGGCGCGGCGCTGGGCGGCGGCGTGGGTTACTAC
ATGGACGTACAGGAAGCGAAACTGCGTGACAAAATGCGGGGCACAGGCGTTAGCGTGACGCGAAGCGGCGATAATATCAT
TCTGAATATGCCGAATAATGTCACCTTCGACAGCAGCAGCGCGACGCTGAAACCGGCAGGCGCTAACACGCTGACCGGCG
TGGCGATGGTGCTGAAAGAGTATCCCAAGACCGCCGTCAATGTGGTGGGCTACACCGACAGTACCGGTAGCCACGATCTG
AATATGCGTCTGTCGCAGCAGCGTGCTGACTCCGTCGCCAGTTCGCTGATCACCCAGGGCGTCGACGCCAGCCGTATCCG
TACCAGCGGAATGGGTCCGGCGAACCCGATCGCCAGCAACAGTACGGCAGAAGGTAAGGCGCAAAACCGCCGCGTCGAAA
TTACCTTGAGTCCATTGCAGTAA

Upstream 100 bases:

>100_bases
CAAATTTCAGAGTTTTCCCTGGAATTTTCTTCATGTGCAGACGTCATAATCAACCGCCACGGTCGCTGTGGTAAAAATAA
AAAAGTGATAAGGATTTAAG

Downstream 100 bases:

>100_bases
ACTACCGTACCGGGTAAGGCGGCATGCTTTACCCGGCCTGCATTATTCCCTCGCCAGACCGGATACACGTCGCATTATTC
AGTATTCATTCACTATTTAC

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDL
NMRLSQQRADSVASSLITQGVDASRIRTSGMGPANPIASNSTAEGKAQNRRVEITLSPLQ

Sequences:

>Translated_220_residues
MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDL
NMRLSQQRADSVASSLITQGVDASRIRTSGMGPANPIASNSTAEGKAQNRRVEITLSPLQ
>Mature_220_residues
MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDL
NMRLSQQRADSVASSLITQGVDASRIRTSGMGPANPIASNSTAEGKAQNRRVEITLSPLQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=219, Percent_Identity=95.4337899543379, Blast_Score=380, Evalue=1e-107,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=37.5, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22305; Mature: 22305

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRG
CCCEEEEEEEHHHCHHEEECCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
KGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSS
CCEEEECCCCHHHCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCC
ATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASSLITQG
CEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHCC
VDASRIRTSGMGPANPIASNSTAEGKAQNRRVEITLSPLQ
CCHHHHEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRG
CCCEEEEEEEHHHCHHEEECCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
KGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSS
CCEEEECCCCHHHCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCC
ATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASSLITQG
CEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHCC
VDASRIRTSGMGPANPIASNSTAEGKAQNRRVEITLSPLQ
CCHHHHEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]