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The map label for this gene is yiaG [H]

Identifier: 29144147

GI number: 29144147

Start: 3997697

End: 3998104

Strand: Reverse

Name: yiaG [H]

Synonym: t3871

Alternate gene names: 29144147

Gene position: 3998104-3997697 (Counterclockwise)

Preceding gene: 29144149

Following gene: 29144146

Centisome position: 83.43

GC content: 46.81

Gene sequence:

>408_bases
ATGCATTTCACGATCCCGCTGTGTGATTTACAGGAGTTCTCAATGGAATATAAAGATCCGATGTTTGAGCTGCTGAGCAG
CCTGGAACAAATTGTTTTTAAAGATGAAACACGAAAGATCACCCTGACGCAAAAACCCAATCCTTTTACCGAATTTGAAC
AGTTACGGAGAGGAACGGGACTAAAAACAGATGAATTCGCCAGAGCGCTGGGCGTAACGGTTGCCATGGTTCAGGAATGG
GAATCGAAACGCGAAAAACCCACGCCAGCAGAGCTCAAATTGATGCGCCTGATACAGGCGAACCCACGCTTAAGTAAGCA
ATTGATGGAGCAATTTTTACCCCTTTCTGTTTTAACGGTCCTGCGTAAGGGCCGTTTCCCCCGCCCGATTACTGGCCTGG
AGAAATAA

Upstream 100 bases:

>100_bases
AAAGTCGCGTAGCGTAAGGCATCGAAACGAATCGATAGCGCTTCCTGGCGGCGCGTCGCCCCCCACCCGCAAGTTTCCCG
ACTATTCTTAAGAGGCTTCG

Downstream 100 bases:

>100_bases
AGTAAAATAAAAGTTGCATCGCCCGGCATTACATGAGTTAATGTGCTCAACGGTTTGACGTACAGACCATTAAAGCAGTT
TAGTAAGGCAAGTCCCTTCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MHFTIPLCDLQEFSMEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRGTGLKTDEFARALGVTVAMVQEW
ESKREKPTPAELKLMRLIQANPRLSKQLMEQFLPLSVLTVLRKGRFPRPITGLEK

Sequences:

>Translated_135_residues
MHFTIPLCDLQEFSMEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRGTGLKTDEFARALGVTVAMVQEW
ESKREKPTPAELKLMRLIQANPRLSKQLMEQFLPLSVLTVLRKGRFPRPITGLEK
>Mature_135_residues
MHFTIPLCDLQEFSMEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRGTGLKTDEFARALGVTVAMVQEW
ESKREKPTPAELKLMRLIQANPRLSKQLMEQFLPLSVLTVLRKGRFPRPITGLEK

Specific function: Unknown

COG id: COG2944

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789978, Length=96, Percent_Identity=79.1666666666667, Blast_Score=157, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15770; Mature: 15770

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFTIPLCDLQEFSMEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRGTG
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCC
LKTDEFARALGVTVAMVQEWESKREKPTPAELKLMRLIQANPRLSKQLMEQFLPLSVLTV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LRKGRFPRPITGLEK
HHCCCCCCCCCCCCC
>Mature Secondary Structure
MHFTIPLCDLQEFSMEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRGTG
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCC
LKTDEFARALGVTVAMVQEWESKREKPTPAELKLMRLIQANPRLSKQLMEQFLPLSVLTV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LRKGRFPRPITGLEK
HHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]