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The map label for this gene is yidC [H]

Identifier: 29143972

GI number: 29143972

Start: 3787571

End: 3789217

Strand: Reverse

Name: yidC [H]

Synonym: t3678

Alternate gene names: 29143972

Gene position: 3789217-3787571 (Counterclockwise)

Preceding gene: 29143973

Following gene: 29143971

Centisome position: 79.07

GC content: 54.1

Gene sequence:

>1647_bases
ATGGATTCGCAACGCAATCTTTTAGTCATCGCTTTGCTGTTCGTGTCTTTCATGATCTGGCAAGCCTGGGAGCAGGATAA
AAATCCGCAACCTCAGACTCAACAGACCATGCAGACAACGACCACCGCAGCGGGTAGCGCCGCCGACCAGGGCGTACCAG
CCAGTGGCCAGGGGAAAATGATTACGGTGAAAACCGATGTGCTTGATTTGACTATCAACACCCGTGGTGGTGATGTCGAG
CAGGCCTTGCTCCCGGCTTACCCGAAAGAACTGGGTTCCAACGAACCGTTCCAGCTGCTGGAAACCACCCCGCAGTTTAT
CTATCAGGCGCAAAGCGGCCTGACAGGCCGCGACGGCCCGGATAACCCGGCGAACGGCCCGCGTCCGCTGTACAACGTCG
AGAAAGATGCGTTTGTACTGGCCGACGGTCAGAACGAACTGCAGGTTCCGATGACTTATACTGACGCCGCAGGCAACACG
TTTACCAAAACGTTTGTCTTTAAGCGTGGCGATTATGCGGTTAACGTGAACTATAGCGTGCAGAACACCGGCGAAAAACC
GCTGGAAGTCTCCACCTTTGGTCAGTTAAAACAATCCGTCAACCTGCCTCCTCATCGCGACACCGGCAGTAGCAACTTTG
CGTTGCATACGTTCCGCGGCGCAGCGTACTCCACGCCGGATGAGAAGTATGAGAAATACAAATTCGACACCATTGCCGAT
AACGAAAACCTCAACGTCAGCTCCAAAGGCGGTTGGGTGGCAATGTTGCAGCAGTATTTCGCTACCGCATGGATTCCGCG
TAACGACGGCACCAACAATTTCTACACCGCCAATCTGGGTAACGGCATTGTCGCTATCGGCTATAAAGCGCAGCCGGTAC
TGGTACAGCCAGGCCAGACTGGCGCGATGACCAGCACCCTGTGGGTCGGCCCGGAAATTCAGGATAAAATGGCGGCTGTT
GCACCGCACCTGGATTTGACCGTGGACTACGGCTGGTTGTGGTTCATCTCTCAGCCGCTGTTCAAGTTGCTGAAGTGGAT
CCACAGCTTTGTGGGCAACTGGGGCTTCTCCATTATCATCATTACCTTTATCGTTCGCGGTATCATGTACCCGCTGACCA
AAGCGCAGTACACGTCAATGGCGAAGATGCGTATGCTGCAGCCGAAAATTCAGGCGATGCGCGAACGTCTTGGCGATGAT
AAACAGCGCCAAAGCCAGGAGATGATGGCCCTGTACAAAGCGGAGAAGGTTAACCCGCTGGGCGGCTGCTTCCCGCTGAT
CATCCAGATGCCTATCTTCCTGGCGTTGTACTACATGCTGATGGGTTCCATTGAACTGCGTCATGCGCCGTTCGCGCTGT
GGATTCATGACCTGTCTGCACAGGACCCGTACTACATTCTGCCGATCCTGATGGGCGTAACGATGTTCTTCATTCAGAAG
ATGTCGCCGACCACCGTGACCGACCCGATGCAGCAGAAGATCATGACCTTTATGCCGGTCATCTTTACAGTGTTCTTCCT
GTGGTTCCCGTCAGGTCTGGTGCTGTACTATATCGTCAGCAACCTGGTCACCATCATTCAGCAGCAGCTGATTTACCGTG
GTCTGGAGAAGCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGA

Upstream 100 bases:

>100_bases
GTTGGTTGACGGTGAAACGCGTATTAAAATGCCACCCTTTACACCCTGGTGGTGACGATCCCGTCCCGCCCGGACCATTT
GATACCAGAGAACACTAACG

Downstream 100 bases:

>100_bases
TTCGGTGTAGGCCGGATAAGGCGAAGCCGCCATCCGGCAAGGCGCGCCGGTCAGCCTGATGGCGCTAACGCTTATCAGGC
CTACAATCAAAAGGCGGTCA

Product: inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTMQTTTTAAGSAADQGVPASGQGKMITVKTDVLDLTINTRGGDVE
QALLPAYPKELGSNEPFQLLETTPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAFVLADGQNELQVPMTYTDAAGNT
FTKTFVFKRGDYAVNVNYSVQNTGEKPLEVSTFGQLKQSVNLPPHRDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD
NENLNVSSKGGWVAMLQQYFATAWIPRNDGTNNFYTANLGNGIVAIGYKAQPVLVQPGQTGAMTSTLWVGPEIQDKMAAV
APHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDD
KQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLMGSIELRHAPFALWIHDLSAQDPYYILPILMGVTMFFIQK
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS

Sequences:

>Translated_548_residues
MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTMQTTTTAAGSAADQGVPASGQGKMITVKTDVLDLTINTRGGDVE
QALLPAYPKELGSNEPFQLLETTPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAFVLADGQNELQVPMTYTDAAGNT
FTKTFVFKRGDYAVNVNYSVQNTGEKPLEVSTFGQLKQSVNLPPHRDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD
NENLNVSSKGGWVAMLQQYFATAWIPRNDGTNNFYTANLGNGIVAIGYKAQPVLVQPGQTGAMTSTLWVGPEIQDKMAAV
APHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDD
KQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLMGSIELRHAPFALWIHDLSAQDPYYILPILMGVTMFFIQK
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS
>Mature_548_residues
MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTMQTTTTAAGSAADQGVPASGQGKMITVKTDVLDLTINTRGGDVE
QALLPAYPKELGSNEPFQLLETTPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAFVLADGQNELQVPMTYTDAAGNT
FTKTFVFKRGDYAVNVNYSVQNTGEKPLEVSTFGQLKQSVNLPPHRDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD
NENLNVSSKGGWVAMLQQYFATAWIPRNDGTNNFYTANLGNGIVAIGYKAQPVLVQPGQTGAMTSTLWVGPEIQDKMAAV
APHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDD
KQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLMGSIELRHAPFALWIHDLSAQDPYYILPILMGVTMFFIQK
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790140, Length=548, Percent_Identity=95.0729927007299, Blast_Score=1056, Evalue=0.0,
Organism=Drosophila melanogaster, GI24662345, Length=196, Percent_Identity=25.5102040816327, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356443, Length=196, Percent_Identity=25.5102040816327, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019998
- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 61681; Mature: 61681

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTMQTTTTAAGSAADQGVPASGQGKM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
ITVKTDVLDLTINTRGGDVEQALLPAYPKELGSNEPFQLLETTPQFIYQAQSGLTGRDGP
EEEEEEEEEEEEECCCCCHHHHHHCCCHHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCC
DNPANGPRPLYNVEKDAFVLADGQNELQVPMTYTDAAGNTFTKTFVFKRGDYAVNVNYSV
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCEEEEEEEEE
QNTGEKPLEVSTFGQLKQSVNLPPHRDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD
CCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHEECCEECC
NENLNVSSKGGWVAMLQQYFATAWIPRNDGTNNFYTANLGNGIVAIGYKAQPVLVQPGQT
CCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECCCCC
GAMTSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIII
CCCEEEEEECCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRQSQEMMALYKAEKVNPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
GGCFPLIIQMPIFLALYYMLMGSIELRHAPFALWIHDLSAQDPYYILPILMGVTMFFIQK
CCHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HSREKKKS
CCHHHCCC
>Mature Secondary Structure
MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTMQTTTTAAGSAADQGVPASGQGKM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
ITVKTDVLDLTINTRGGDVEQALLPAYPKELGSNEPFQLLETTPQFIYQAQSGLTGRDGP
EEEEEEEEEEEEECCCCCHHHHHHCCCHHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCC
DNPANGPRPLYNVEKDAFVLADGQNELQVPMTYTDAAGNTFTKTFVFKRGDYAVNVNYSV
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCEEEEEEEEE
QNTGEKPLEVSTFGQLKQSVNLPPHRDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD
CCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHEECCEECC
NENLNVSSKGGWVAMLQQYFATAWIPRNDGTNNFYTANLGNGIVAIGYKAQPVLVQPGQT
CCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECCCCC
GAMTSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIII
CCCEEEEEECCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRQSQEMMALYKAEKVNPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
GGCFPLIIQMPIFLALYYMLMGSIELRHAPFALWIHDLSAQDPYYILPILMGVTMFFIQK
CCHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HSREKKKS
CCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA