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The map label for this gene is stbB [H]

Identifier: 29142906

GI number: 29142906

Start: 2596909

End: 2597670

Strand: Direct

Name: stbB [H]

Synonym: t2522

Alternate gene names: 29142906

Gene position: 2596909-2597670 (Clockwise)

Preceding gene: 29142905

Following gene: 29142907

Centisome position: 54.19

GC content: 44.88

Gene sequence:

>762_bases
ATGAAAATGGATACCCGACATTCCGCATTATATTACTTAATAGTTTTTCTATTGCTGGCCCTACCCGCCACAGCATCGTG
GGCGAGCGTTACTATTTTGGGTAGCCGAATAATTTACCCATCAACAGCCTCCTCCGTAGATGTGCAGTTAAAAAATAATG
ATGCAATACCTTATATCGTACAAACCTGGTTTGATGATGGCGATATGAATACCAGCCCGGAAAATAGCAGCGCGATGCCG
TTTATTGCCACGCCGCCAGTATTTCGTATTCAACCCAAAGCAGGCCAGGTGGTACGCGTAATTTATAACAACACAAAAAA
ATTGCCGCAGGATCGTGAATCAGTATTCTGGTTTAACGTATTACAGGTGCCACCAACGAATATTGGCAGCGACAGCGGGA
AAAATAAAATGTTGGTGATGCTACGCTCAAGAATAAAGCTTTTCTATCGTCCTGACGGGCTAGGTAAACCTGATAATCTG
GCGAAAAAACTACAGATTAAAACGGTAAATAAGGGTTCTGGAAAAAGCGGTATTGTTATCGTTAATCCGCAGCCCTGGTT
TGCCTCTTTAAGTAACCTGAATGTAAAAGTGAACGGCGCTTCGTATAACCTGGATGCAGACATGATTGCCCCTTTTTCCA
GTCAAACCTGGTGGCTGCCGGGCAAACGGTCACTCAAATCCTTCTCCGGTACAGTCACCGTTACTTTGGTTAACGACCTG
GGCGCAAGGATAAGCGAGAGCTACGATGTCCCCCACCATTAA

Upstream 100 bases:

>100_bases
GTCGCTGCCACCCTACAATACGCCGTTTCGTATAAATAATTGTCGCTACGGTCTGGCATTGAAACGCCAGACCATTTTCA
ATCGCCAGGGAGTTGTTGAG

Downstream 100 bases:

>100_bases
TTTGAACCGCAAAAGCCTTGCGCTATTGATCGCCATAGTTTGCTCAGGCTCCGCGCAGGGTGAAGAGTATTATTTTGATC
CTGCGCTACTTCAGGGGGCC

Product: fimbrial chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKMDTRHSALYYLIVFLLLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMP
FIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVPPTNIGSDSGKNKMLVMLRSRIKLFYRPDGLGKPDNL
AKKLQIKTVNKGSGKSGIVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDL
GARISESYDVPHH

Sequences:

>Translated_253_residues
MKMDTRHSALYYLIVFLLLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMP
FIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVPPTNIGSDSGKNKMLVMLRSRIKLFYRPDGLGKPDNL
AKKLQIKTVNKGSGKSGIVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDL
GARISESYDVPHH
>Mature_253_residues
MKMDTRHSALYYLIVFLLLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMP
FIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVPPTNIGSDSGKNKMLVMLRSRIKLFYRPDGLGKPDNL
AKKLQIKTVNKGSGKSGIVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDL
GARISESYDVPHH

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=248, Percent_Identity=39.9193548387097, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788428, Length=214, Percent_Identity=40.1869158878505, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1790771, Length=232, Percent_Identity=29.3103448275862, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1786936, Length=182, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786743, Length=240, Percent_Identity=30.8333333333333, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787171, Length=231, Percent_Identity=29.004329004329, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788677, Length=218, Percent_Identity=32.5688073394495, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789532, Length=235, Percent_Identity=27.2340425531915, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082203, Length=234, Percent_Identity=28.6324786324786, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081806, Length=220, Percent_Identity=26.3636363636364, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28033; Mature: 28033

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMDTRHSALYYLIVFLLLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIV
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEECCCCCCEEEEEECCCCCCCEEE
QTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNV
EEEECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEE
LQVPPTNIGSDSGKNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVI
EECCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCHHHHHEEEEEEECCCCCCCCEEE
VNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDL
ECCCCHHHHHCCCEEEECCCEEECCHHHCCCCCCCEEECCCCHHHHHCCCEEEEEEECCC
GARISESYDVPHH
CCHHHCCCCCCCC
>Mature Secondary Structure
MKMDTRHSALYYLIVFLLLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIV
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEECCCCCCEEEEEECCCCCCCEEE
QTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNV
EEEECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEE
LQVPPTNIGSDSGKNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVI
EECCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCHHHHHEEEEEEECCCCCCCCEEE
VNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDL
ECCCCHHHHHCCCEEEECCCEEECCHHHCCCCCCCEEECCCCHHHHHCCCEEEEEEECCC
GARISESYDVPHH
CCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]