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The map label for this gene is stbD

Identifier: 29142907

GI number: 29142907

Start: 2600220

End: 2601545

Strand: Direct

Name: stbD

Synonym: t2524

Alternate gene names: NA

Gene position: 2600220-2601545 (Clockwise)

Preceding gene: 29142906

Following gene: 29142908

Centisome position: 54.26

GC content: 52.04

Gene sequence:

>1326_bases
ATGCTTTTTAGTTTCCGAACGCTCTTGTTTATCACCAGTCTGTTCGTCAGCGCCGGAACATGGTCGTCATGTATAAAAGT
CACCGATAAGAGCGCGCTCTCTGACGCGGCGATAAAAGCGGGCTACACGGCGCAAAACTGGATCGGCGCACTTGACACGA
ATACGGGTAATATCGGTTTGCCAACGGTGATTAGCATCAGTAATAGTGAAACATTTCAACCCTCCGGCACACTATTGGCC
AGTGGGATCGGTAACTTCCTGACGGCCGCCACCGGAACGCCCTATTCCAGTAAACAGGTACTTTACCGCTGCGATTCCGC
CGATGCCGGGAAGCTCTATGAGATGTATTCGACAAATGGCGATAGCGCTTTTGCGGGGGCATTTTTTACTCCCGAAGTAG
AAGGCGCCTATTATGATGTGGAGCGTAATGTCGCTGTCCGTATGACAAACCTCAGTACCGGCGAATATTACAGCCGCTTC
TGGAAAGAACGCCAACTTACCGCAGACAGTTGGTTTCAGGATGACAAATATATTTATATTCCTGCCAGCGCGTTTAGCAA
CGTGTTATATGAGATGTTTAAAATTGACTCAAGAAAATATTTTGCCTACCAGAATCCAATGGACCGAGATACCTGGACGC
AGCCTCGGGGTTATATCGCGTTTAAAGGCCCAGGCTTGATTACCGAGCGGATCAAAGCGGGACTGGATCATGCCAGCGAT
TATTATGGCTGGCCCAGCTATTGGCCCGGGGCATGGAGTACATATAATAGCGTCACCTATGTTCGCGGCGCGTTATGTAA
AATCACAGATTATCCTGCGATCGTGAAAATTCCCCCTGTCGCCGTCGGCATATTAGCCGCCGGAGGCAATAGTCAGGCGC
CTTTCCACGTCAGCCTAGAATGTGAGTCCGGTGCCGTGTCCAGTGCCCTCCCGTCCACCAGCGCCGCTAATGTCGCAATG
GGGTTTGTCGTTAATCAACCCACCGCCGTGGCGGCGGCGCGTCGCCTGGGGCTAACCACATCTGCAGGCGGTCTGTCGTG
GCTACTGGACACCCATTATGGCGAACCTGGCGTAGCTTCCGGAGTGGGTATCCGCATCTATAACGATGCCGGTACGCCGA
TTAACCTGTTACCCGATCGGATCAAGACAGGCACTGGCAACGCCCGAGGCTGGTATGGCTATAAAGATTTAACCACACGG
GTATCATCCGGTTCAGTAGAAACCTATAGCGGTGATTTTACTGCCTCGCTTGAGGCGCTCGGCGGACAAACAGTAACGGC
AGGAAGCGTGAATGCGCAATTACAGGCAGTGGTTAGTTTTCAGTAA

Upstream 100 bases:

>100_bases
ACAGGGGCAAACCAGCGTTGCCGGGTTGCCTACCAACTCGATCTTCACACCAAAGAACCGTTTCTCTATCTGAACAAAAT
CTGCGAGAAGGAATAGCACA

Downstream 100 bases:

>100_bases
AGTCATATTAACGCTACTTGGGTTGACGGGATGGTATGGCCCGGCACAAGCTGCCGTTAATATTGACAGAACCCGAATTA
TTTTTGCTTCAGATGAGGTC

Product: fimbrial protein

Products: NA

Alternate protein names: Adhesin MrkD; Fimbriae Usher Protein; Fimbriae; Fimbrial Adhesin; Fimbrial Protein Domain-Containing Protein; Fimbrial Protein

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTAQNWIGALDTNTGNIGLPTVISISNSETFQPSGTLLA
SGIGNFLTAATGTPYSSKQVLYRCDSADAGKLYEMYSTNGDSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRF
WKERQLTADSWFQDDKYIYIPASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGYIAFKGPGLITERIKAGLDHASD
YYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVKIPPVAVGILAAGGNSQAPFHVSLECESGAVSSALPSTSAANVAM
GFVVNQPTAVAAARRLGLTTSAGGLSWLLDTHYGEPGVASGVGIRIYNDAGTPINLLPDRIKTGTGNARGWYGYKDLTTR
VSSGSVETYSGDFTASLEALGGQTVTAGSVNAQLQAVVSFQ

Sequences:

>Translated_441_residues
MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTAQNWIGALDTNTGNIGLPTVISISNSETFQPSGTLLA
SGIGNFLTAATGTPYSSKQVLYRCDSADAGKLYEMYSTNGDSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRF
WKERQLTADSWFQDDKYIYIPASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGYIAFKGPGLITERIKAGLDHASD
YYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVKIPPVAVGILAAGGNSQAPFHVSLECESGAVSSALPSTSAANVAM
GFVVNQPTAVAAARRLGLTTSAGGLSWLLDTHYGEPGVASGVGIRIYNDAGTPINLLPDRIKTGTGNARGWYGYKDLTTR
VSSGSVETYSGDFTASLEALGGQTVTAGSVNAQLQAVVSFQ
>Mature_441_residues
MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTAQNWIGALDTNTGNIGLPTVISISNSETFQPSGTLLA
SGIGNFLTAATGTPYSSKQVLYRCDSADAGKLYEMYSTNGDSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRF
WKERQLTADSWFQDDKYIYIPASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGYIAFKGPGLITERIKAGLDHASD
YYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVKIPPVAVGILAAGGNSQAPFHVSLECESGAVSSALPSTSAANVAM
GFVVNQPTAVAAARRLGLTTSAGGLSWLLDTHYGEPGVASGVGIRIYNDAGTPINLLPDRIKTGTGNARGWYGYKDLTTR
VSSGSVETYSGDFTASLEALGGQTVTAGSVNAQLQAVVSFQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47393; Mature: 47393

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTAQNWIGALDTNTGNIGL
CCCCHHHHHHHHHHHHCCCCHHHHEEECCHHHHHHHHHHCCCCHHHCEEEEECCCCCCCC
PTVISISNSETFQPSGTLLASGIGNFLTAATGTPYSSKQVLYRCDSADAGKLYEMYSTNG
CEEEEECCCCCCCCCCCEEHHCHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCCC
DSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRFWKERQLTADSWFQDDKYIYI
CCEEECEEECCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHCCCHHHCCCCCCEEEE
PASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGYIAFKGPGLITERIKAGLDHASD
EHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCC
YYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVKIPPVAVGILAAGGNSQAPFHVSLE
CCCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCEEEECCEEEEEEEECCCCCCCEEEEEE
CESGAVSSALPSTSAANVAMGFVVNQPTAVAAARRLGLTTSAGGLSWLLDTHYGEPGVAS
ECCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCEECCCCEEEEEECCCCCCCCCC
GVGIRIYNDAGTPINLLPDRIKTGTGNARGWYGYKDLTTRVSSGSVETYSGDFTASLEAL
CCEEEEECCCCCCCEECCHHHCCCCCCCCCEECHHHHHEEECCCCEEEECCCCEEEHHHC
GGQTVTAGSVNAQLQAVVSFQ
CCCEEEECCCCCEEEEEEECC
>Mature Secondary Structure
MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTAQNWIGALDTNTGNIGL
CCCCHHHHHHHHHHHHCCCCHHHHEEECCHHHHHHHHHHCCCCHHHCEEEEECCCCCCCC
PTVISISNSETFQPSGTLLASGIGNFLTAATGTPYSSKQVLYRCDSADAGKLYEMYSTNG
CEEEEECCCCCCCCCCCEEHHCHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCCC
DSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRFWKERQLTADSWFQDDKYIYI
CCEEECEEECCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHCCCHHHCCCCCCEEEE
PASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGYIAFKGPGLITERIKAGLDHASD
EHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCC
YYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVKIPPVAVGILAAGGNSQAPFHVSLE
CCCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCEEEECCEEEEEEEECCCCCCCEEEEEE
CESGAVSSALPSTSAANVAMGFVVNQPTAVAAARRLGLTTSAGGLSWLLDTHYGEPGVAS
ECCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCEECCCCEEEEEECCCCCCCCCC
GVGIRIYNDAGTPINLLPDRIKTGTGNARGWYGYKDLTTRVSSGSVETYSGDFTASLEAL
CCEEEEECCCCCCCEECCHHHCCCCCCCCCEECHHHHHEEECCCCEEEECCCCEEEHHHC
GGQTVTAGSVNAQLQAVVSFQ
CCCEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA