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The map label for this gene is hpaA [C]

Identifier: 29142242

GI number: 29142242

Start: 1874406

End: 1875302

Strand: Reverse

Name: hpaA [C]

Synonym: t1811

Alternate gene names: 29142242

Gene position: 1875302-1874406 (Counterclockwise)

Preceding gene: 29142243

Following gene: 29142241

Centisome position: 39.13

GC content: 51.39

Gene sequence:

>897_bases
ATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAAAGCATGGGCAGTAACGATGTGCATTATCA
GTCGTTTGCTCGTATGGCGGATTTCTTTGGTCGTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTC
TTGATACCGGGCAGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTAACGCCGCCC
TCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTTCTGACGGTACGCGAAGAGCTGGTTTGGCCGCT
GCTGGAAGTGCTTTATCCCGGCACCAGAGAGGCCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACG
AGCTGGCGGCGCTCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAACATACCTTG
GTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTGGACGATCATGCCGCAACCGGGATGCGCGG
TGAACTGAAACTTTTTCAGCGCTTTACCCTGTTAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCT
GTGAGTTGCATATTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGCCTGATTTTT
GATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCTGTCAACGAGATCGCCTGGCAATTAGGTTT
TAAAGATCCGGCTTATTTCGCCCGTTTCTTTAATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTC
CTTCTTTTCTCAACTAA

Upstream 100 bases:

>100_bases
ACTCTGGTTTGTCGCTTCTCTGTTAGTCGTCGGCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCGCGCG
CCACCCCTTGAGGAGAAACT

Downstream 100 bases:

>100_bases
GAAGAGTAAAAACATGATGAAAAAAAGCGTCGCTATGCTGGCGGTTTGTATGCTGGCGCAAAGCCACCTTGCCATTGCTG
CCGGTGCTCCTGCGCCTCAA

Product: 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; PobR Regulator; AraC-Family Transcriptional Regulator; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Transcriptional Regulatory Protein AraC-Type; Transcriptional Regulator Arac Family; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Type; Transcriptional Regulator Pobr Arac Family Protein; Regulator Of 4hpa-Hydroxylase Operon; AraC/XylS Family Transcription Factor; Transcriptional Regulator Protein; AraC-Type Regulatory Protein; AraC Protein

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPP
SVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFGLPGICLSLADKLNELAALKHYWQLIERESTEQLAGCEHTL
VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN

Sequences:

>Translated_298_residues
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPP
SVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFGLPGICLSLADKLNELAALKHYWQLIERESTEQLAGCEHTL
VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN
>Mature_298_residues
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPP
SVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFGLPGICLSLADKLNELAALKHYWQLIERESTEQLAGCEHTL
VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34566; Mature: 34566

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIE
CCCHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHEEEEEECCCEEE
LQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFG
EEECCCEEEEECCEEEECCCCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCHHCC
LPGICLSLADKLNELAALKHYWQLIERESTEQLAGCEHTLVLLAQAVFTLLLRNAKLDDH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCH
AATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHH
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN
HHHHHHHHHEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIE
CCCHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHEEEEEECCCEEE
LQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFG
EEECCCEEEEECCEEEECCCCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCHHCC
LPGICLSLADKLNELAALKHYWQLIERESTEQLAGCEHTLVLLAQAVFTLLLRNAKLDDH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCH
AATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHH
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN
HHHHHHHHHEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA