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The map label for this gene is ychO [H]

Identifier: 29142111

GI number: 29142111

Start: 1741664

End: 1743193

Strand: Reverse

Name: ychO [H]

Synonym: t1677

Alternate gene names: 29142111

Gene position: 1743193-1741664 (Counterclockwise)

Preceding gene: 29142113

Following gene: 29142108

Centisome position: 36.38

GC content: 53.27

Gene sequence:

>1530_bases
ATGCGTGGAGAAAATCCCGGGACGCTCTGCGGAAAAAATAAGGATATTCCTGGAAACACGAGAAAAGGCTGCAAAACCTG
TCCGGACACGTTATGGTTTACTCTGATGCCATTCCTCTTATCTTTTGTTGTAGAAGTTGCCGACACGTTGAGCCGTATTG
TTTTTCGTTCATTCTCACTCTCGCTTCTCTTGCTGGCTGCCAGCGGTACGATCCGTGCGCAGGCGCAAGACCCTTTCGAT
CAAAACCGTCTGCCGGATTTAGGCATGATGCCGGAATCCCACGAAGGGGAAAAGCATTTTGCCGAGATGGCCAAAGCGTT
TAGCGAAGCCAGCATGAAAAATAACGATCTGGATACCGGTGAACAGGCGCGGCAATTCGCTTTCGGACAGGTACGCGATG
TGGTCAGCGAGCAGGTTAACCAGCAGCTTGAAAGCTGGCTATCAGCCTGGGGCAGCGCCAGCGTGGATATTAACGTCGAT
AACGAAGGTCATTTTAACGGCAGTCGCGGAAGCTGGTTTATCCCTTTACAGGATAAACAGCGCTATCTGACCTGGAGCCA
GCTTGGTCTTACGCAACAGACTGACGGACTGGTAAGCAACGTTGGCATAGGACAGCGCTGGGCGCAGGATGGCTGGCTTC
TTGGCTATAATACCTTTTACGATAATCTGCTGGATGAAAATCTGCAGCGCGCCGGCTTTGGCGCGGAGGCGTGGGGAGAA
TATTTGCGTTTATCCGCCAACTATTATCAGCCTTTTGCCGACTGGCAGACGCATACGGCGACCTTAGAACAGCGAATGGC
GCGCGGATATGATATCAACGCGCAAGTGCGGCTGCCGTTTTACCAGCATATCAATACCAGCGTTAGTCTGGAGCAGTACT
TTGGCGATAGCGTGGATCTGTTTGACTCCGGAACGGGGTATCACAATCCTGTCGCGTTAAAACTGGGTCTCAACTATACG
CCAGTACCTTTGCTTACTATGACCGCCCAGCACAAACAGGGCGAGAGCGGGGTCAGTCAGAATAACCTGGGGCTGACGCT
TAACTACCGCTTCGGCGTGCCGCTCAAAAAGCAGCTTGCCGCCAGTGAAGTGGCGCAAAGCCAGTCATTACGCGGTAGCC
GCTATGATACGCCGCAACGTAACTCGCTGCCGACAATGGAGTATCGGCAGCGTAAAACGTTAACGGTTTTTCTGGCGACG
CCGCCCTGGGATCTTACGCCTGGTGAGACGGTTGCGTTAAAATTGCAGGTGCGCAGCGTGCACGGTATTCGTCATTTGAG
CTGGCAGGGCGATACACAGGCATTAAGTTTGACGGCAGGAACGGACACCCGCAGTACCGAGGGCTGGACAATCATTATGC
CGGCCTGGGATCACCGCGAAGGCGCGGCAAATCGCTGGCGTTTATCGGTGGTGGTTGAGGATGAAAAAGGTCAGCGTGTC
TCTTCCAATGAGATCACGCTCGCGCTGACTGAACCGTTTATCACGATGCCGGACGATAATCCGCATTGGCAACCGTTCCA
GGAGCAATAA

Upstream 100 bases:

>100_bases
CCGTTAGCGATAATGACGATATTTTGCATGGATAACCCTTCTCCTTGAGAAATTTTGTCGGCAATGGCGTTATGTTACCT
CGGGAACCGGGTACCGCCAA

Downstream 100 bases:

>100_bases
TTAAAAGATGCGTTCCTGATGCATCCAGACGGCGGCCTCCACGCGCGATTTCAGCTTCATTTTCTTGAGCATATGTTTCA
CGTGCACTTTGACCGTACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MRGENPGTLCGKNKDIPGNTRKGCKTCPDTLWFTLMPFLLSFVVEVADTLSRIVFRSFSLSLLLLAASGTIRAQAQDPFD
QNRLPDLGMMPESHEGEKHFAEMAKAFSEASMKNNDLDTGEQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDINVD
NEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTDGLVSNVGIGQRWAQDGWLLGYNTFYDNLLDENLQRAGFGAEAWGE
YLRLSANYYQPFADWQTHTATLEQRMARGYDINAQVRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPVALKLGLNYT
PVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLAT
PPWDLTPGETVALKLQVRSVHGIRHLSWQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRV
SSNEITLALTEPFITMPDDNPHWQPFQEQ

Sequences:

>Translated_509_residues
MRGENPGTLCGKNKDIPGNTRKGCKTCPDTLWFTLMPFLLSFVVEVADTLSRIVFRSFSLSLLLLAASGTIRAQAQDPFD
QNRLPDLGMMPESHEGEKHFAEMAKAFSEASMKNNDLDTGEQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDINVD
NEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTDGLVSNVGIGQRWAQDGWLLGYNTFYDNLLDENLQRAGFGAEAWGE
YLRLSANYYQPFADWQTHTATLEQRMARGYDINAQVRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPVALKLGLNYT
PVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLAT
PPWDLTPGETVALKLQVRSVHGIRHLSWQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRV
SSNEITLALTEPFITMPDDNPHWQPFQEQ
>Mature_509_residues
MRGENPGTLCGKNKDIPGNTRKGCKTCPDTLWFTLMPFLLSFVVEVADTLSRIVFRSFSLSLLLLAASGTIRAQAQDPFD
QNRLPDLGMMPESHEGEKHFAEMAKAFSEASMKNNDLDTGEQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDINVD
NEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTDGLVSNVGIGQRWAQDGWLLGYNTFYDNLLDENLQRAGFGAEAWGE
YLRLSANYYQPFADWQTHTATLEQRMARGYDINAQVRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPVALKLGLNYT
PVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLAT
PPWDLTPGETVALKLQVRSVHGIRHLSWQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRV
SSNEITLALTEPFITMPDDNPHWQPFQEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intimin/invasin family [H]

Homologues:

Organism=Escherichia coli, GI145693120, Length=464, Percent_Identity=74.3534482758621, Blast_Score=695, Evalue=0.0,
Organism=Escherichia coli, GI145693153, Length=383, Percent_Identity=30.5483028720627, Blast_Score=169, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57241; Mature: 57241

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGENPGTLCGKNKDIPGNTRKGCKTCPDTLWFTLMPFLLSFVVEVADTLSRIVFRSFSL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLLLLAASGTIRAQAQDPFDQNRLPDLGMMPESHEGEKHFAEMAKAFSEASMKNNDLDTG
EEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
EQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDINVDNEGHFNGSRGSWFIPLQDKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEECCCC
RYLTWSQLGLTQQTDGLVSNVGIGQRWAQDGWLLGYNTFYDNLLDENLQRAGFGAEAWGE
CEEEHHHHCCCCCCCCHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHH
YLRLSANYYQPFADWQTHTATLEQRMARGYDINAQVRLPFYQHINTSVSLEQYFGDSVDL
HHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCEEHHHHCCCCEEE
FDSGTGYHNPVALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLA
CCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCHHHHHH
ASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTPGETVALKLQVRSV
HHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCEEEEEEEEECC
HGIRHLSWQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRV
CCEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCEE
SSNEITLALTEPFITMPDDNPHWQPFQEQ
CCCCEEEEEECCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRGENPGTLCGKNKDIPGNTRKGCKTCPDTLWFTLMPFLLSFVVEVADTLSRIVFRSFSL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLLLLAASGTIRAQAQDPFDQNRLPDLGMMPESHEGEKHFAEMAKAFSEASMKNNDLDTG
EEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
EQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDINVDNEGHFNGSRGSWFIPLQDKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEECCCC
RYLTWSQLGLTQQTDGLVSNVGIGQRWAQDGWLLGYNTFYDNLLDENLQRAGFGAEAWGE
CEEEHHHHCCCCCCCCHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHH
YLRLSANYYQPFADWQTHTATLEQRMARGYDINAQVRLPFYQHINTSVSLEQYFGDSVDL
HHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCEEHHHHCCCCEEE
FDSGTGYHNPVALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLA
CCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCHHHHHH
ASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTPGETVALKLQVRSV
HHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCEEEEEEEEECC
HGIRHLSWQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRV
CCEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCEE
SSNEITLALTEPFITMPDDNPHWQPFQEQ
CCCCEEEEEECCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2657652; 2649492; 7567469 [H]