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The map label for this gene is yciO [H]

Identifier: 29142069

GI number: 29142069

Start: 1692255

End: 1692875

Strand: Reverse

Name: yciO [H]

Synonym: t1633

Alternate gene names: 29142069

Gene position: 1692875-1692255 (Counterclockwise)

Preceding gene: 29142070

Following gene: 29142068

Centisome position: 35.33

GC content: 52.66

Gene sequence:

>621_bases
ATGAGCCAGTTTTTTTATATCCATCCGGATAACCCACAGCAACGGCTGATTAATCAGGCCGTCGACATTGTGCGTAAAGG
CGGTGTTATTGTTTATCCAACCGATTCCGGCTATGCCCTTGGTTGTAAAATTGAAGACAAAGGCGCAATGGAGCGCATTT
GCCGCATCCGTCATCTGCCGGACGGCCACAACTTCACGCTGATGTGCCGCGATTTGTCCGAGTTGTCGACCTACTCCTAC
GTCGACAACGTGGCATTTCGTCTGATGAAAAACAATACGCCGGGTAATTACACCTTTATCCTGAAGGGGACAAAAGAGGT
GCCGCGCCGTCTGTTGCAGGAAAAGCGTAAAACTATCGGCCTGCGCGTACCGTCAAACCCGATTGCGCTGGCGTTATTGG
ATACGCTGGGCGAACCGATGCTCTCGACGTCGTTGATGCTGCCTGGCAGCGATTTTACCGAGTCGGACCCGGAGGAGATT
AAAGATCGGCTGGAGAAGCAGGTGGATCTGATCATCCACGGTGGTTACCTCGGTCAACAGCCTACCACGGTAATCGATTT
GACCAATGACTCCCCGGTGGTGCTGCGCGAAGGCGTCGGCGACGTTACACCTTTCTTATAA

Upstream 100 bases:

>100_bases
TGCCCGTGGATTGAGTTGGGGCGTAAACTCTGGCTGCCCGCTGGCGTTGAAGGCGTATGGCAGGCATGGGAACAGCCGCA
AATATCACAGTGAGGGAAGT

Downstream 100 bases:

>100_bases
GGGCGTAAGCCTGTATACTACGCGGCCTTAAAATGGCGCGGCAACGCGCCGTTCATTCTCCTGTTCGACGCCTGTGAAGG
CGACACCTGAAGGAAGCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYIHPDNPQQRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSY
VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGSDFTESDPEEI
KDRLEKQVDLIIHGGYLGQQPTTVIDLTNDSPVVLREGVGDVTPFL

Sequences:

>Translated_206_residues
MSQFFYIHPDNPQQRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSY
VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGSDFTESDPEEI
KDRLEKQVDLIIHGGYLGQQPTTVIDLTNDSPVVLREGVGDVTPFL
>Mature_205_residues
SQFFYIHPDNPQQRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSYV
DNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGSDFTESDPEEIK
DRLEKQVDLIIHGGYLGQQPTTVIDLTNDSPVVLREGVGDVTPFL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=206, Percent_Identity=93.2038834951456, Blast_Score=401, Evalue=1e-113,
Organism=Escherichia coli, GI2367210, Length=143, Percent_Identity=26.5734265734266, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23107; Mature: 22976

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYIHPDNPQQRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLP
CCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHCCC
DGHNFTLMCRDLSELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG
CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHEE
LRVPSNPIALALLDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQQ
EECCCCCHHHHHHHHCCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCC
PTTVIDLTNDSPVVLREGVGDVTPFL
CCEEEEECCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
SQFFYIHPDNPQQRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLP
CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHCCC
DGHNFTLMCRDLSELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG
CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHEE
LRVPSNPIALALLDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQQ
EECCCCCHHHHHHHHCCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCC
PTTVIDLTNDSPVVLREGVGDVTPFL
CCEEEEECCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]