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The map label for this gene is yhjC [H]

Identifier: 29142021

GI number: 29142021

Start: 1640625

End: 1641530

Strand: Reverse

Name: yhjC [H]

Synonym: t1581

Alternate gene names: 29142021

Gene position: 1641530-1640625 (Counterclockwise)

Preceding gene: 29142023

Following gene: 29142020

Centisome position: 34.26

GC content: 54.53

Gene sequence:

>906_bases
ATGGACAAGCTGGAAGCGATGCAGGTCTATGTTTGCGTAGTGGATACCCATAGTTTTATCAGAGCCGCCGAAGTGCTTGG
CGTGCCGCGCTCAACGGTATCGCGAGTGGTTAAAGAACTGGAATCCTGGCTTAAGATTCAACTTTTGCAACGTACAACCC
GCAAACTTAGCGTGACCGCAGAGGGGCGGCGTTACTACGAAGAGTGCAAAAGAGTGCTGGCAGATATCGCGGCCATGGAG
TCGTCATTTCCTGGCCGGGCGGCACAACCCAAAGGGCGTTTTAAAGTGGGGATGCCGCAATCTCTCGCCCGGCATTGCAT
TATTCCTACGCTCCCGGCCTTTTTGTGCCAGTATCCGGAGCTGGAGCTGATACTTTGTTCCAGCGATAGCGTGGAGGATA
TTATCCTTCAAGGGTATGACTGCGTGATTCGGGCCGGCAGAATCGATGATTCCACCACGCTGGTTGCCCGTCCACTTGCC
AGCTTTAACTGGGTGATAGCAGCATCGCCCACTTACATTGAGCGTTACGGTAGCCCTGAAAATTTAGATGATCTGCAAAA
ACACCATGCAGTCGGCTACCTGAACCACCGCACCGGGCGTACCACCGACTGGTTTTTTACGCGTGAGGGGGAGGATTACG
CGATGCGGGTGCAGGAGACGCTGGTTGTCGATGATACGGACGCTTATATTCAGGCCGGAATACAGGGGCTGGGGTTAATT
CGCGTCGCCAGCTATCTGGTTGCGCCGTATCTGCACAGCGGGGCGCTGGTGACCTGCATGGACAACCATTTTTATGATTT
GCCGCTTGCGCTGGTCTATCCGCAAAACAGGTTTCTGTCGCCTGCGGTACGCGCTTTTTATGACTGGTGCAAAACGGCGC
TGAGCCAGCCGGAGCCTCTTCGCTAA

Upstream 100 bases:

>100_bases
ATTCACCTGTAGATAGAGATTACGTCAGGGATCTGCGTTCGATAAGACGCCGAAGACGGGTTAGACTGTTCTGATAAATG
GGATAATTGGCGGGGGGAAA

Downstream 100 bases:

>100_bases
AAAATATTATTCCGGATATCGCATTGCCTGTTCAGAAAACTTTTTCACAGACGGTCAAAATGACGGTACTGGTTTTTGAC
GCATAAGTAAAAGGCATTAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHFYDLPLALVYPQNRFLSPAVRAFYDWCKTALSQPEPLR

Sequences:

>Translated_301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHFYDLPLALVYPQNRFLSPAVRAFYDWCKTALSQPEPLR
>Mature_301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHFYDLPLALVYPQNRFLSPAVRAFYDWCKTALSQPEPLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=35.016835016835, Blast_Score=190, Evalue=8e-50,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=35.5400696864112, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=29.4736842105263, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=26.1168384879725, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789639, Length=193, Percent_Identity=32.6424870466321, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=27.7027027027027, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=24.8322147651007, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789173, Length=260, Percent_Identity=27.3076923076923, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=23.8255033557047, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788481, Length=303, Percent_Identity=23.1023102310231, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34002; Mature: 34002

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA
CCCHHEEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHCCHHHHHHHHHCCCC
LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE
EEEEEECCCCHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCC
NLDDLQKHHAVGYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLI
CHHHHHHHHHCEEEECCCCCCCCEEEEECCCHHHEEEEHEEEECCCHHHHHHHHHHHHHH
RVASYLVAPYLHSGALVTCMDNHFYDLPLALVYPQNRFLSPAVRAFYDWCKTALSQPEPL
HHHHHHHHHHHCCCCEEEEECCCEEECCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
R
C
>Mature Secondary Structure
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA
CCCHHEEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHCCHHHHHHHHHCCCC
LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE
EEEEEECCCCHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCC
NLDDLQKHHAVGYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLI
CHHHHHHHHHCEEEECCCCCCCCEEEEECCCHHHEEEEHEEEECCCHHHHHHHHHHHHHH
RVASYLVAPYLHSGALVTCMDNHFYDLPLALVYPQNRFLSPAVRAFYDWCKTALSQPEPL
HHHHHHHHHHHCCCCEEEEECCCEEECCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]