Click here to switch to the map view.

The map label for this gene is ydcL [H]

Identifier: 29141960

GI number: 29141960

Start: 1573026

End: 1573694

Strand: Reverse

Name: ydcL [H]

Synonym: t1516

Alternate gene names: 29141960

Gene position: 1573694-1573026 (Counterclockwise)

Preceding gene: 29141961

Following gene: 29141958

Centisome position: 32.84

GC content: 49.03

Gene sequence:

>669_bases
ATGCGTACTCATACTTTATTTAAAGTTGCAGTGCTTACTGGCTTGCTGGCGTTATCCGGCTGTGCGTCTAAAGTCACACA
GCCGGATAAGTATTCTGGATTCTTAAAAAATTATTCGGACCTGAAGGAGACTACTTCCGCCACGGGGAAACCGGTGTTGC
GCTGGGTAGATCCACATTTTAATGACTCTAACTATGACAGTATTGTTTACAATCCGATAACATATTACCCCATCCCCAAG
CCAACGACCCAGGTCGGACAGCAAGTTCTTGATAAACTGCTGGCTTATACGAACACTAAAGTAAAATCAGCAATTGAACA
GCGCAAACCGCTGGTCACGACGGCAGGGCCGCGCAGTTTGATTTTCCGCGAGGCGATTACGGGCGTGGATACCAGCAAAG
AAGGGCTGCAATTCTATGAGGTGATCCCTGTAGCGCTGATTGTGGCGGGCACGCAAATGGCGACGGGCCACCGGACCATG
GATACCCACCTCTATTTTGAGGGTGAGCTGATAGATGCCGCGACCAACAAGCCGGTCGTCAAGGTAGTGCGCCAGGGCGA
AGGTAAAGACCTGAGTAATTCCAGTACGCCAATGGCGTTTGAGACGTTGAAACAGGTTGTGGATGATATGGCGACGGATA
CCTCTATGTTTGACACTAACAAAAAATAA

Upstream 100 bases:

>100_bases
GTTCAAATTGTGCTGTCGTTACCATTTTTAGTGCATCCAGAATGATTTCGTTTTGCTATTATTTCCTTTGCATCATTGCG
AAGACTAAAGGGATCGTTTC

Downstream 100 bases:

>100_bases
TTCTGCGGCGCCATCGCAAGATGGCGCAAACCCCGGCAGATTAGCGGCCGCCATCAGCCAGACAACGACGGGCGGCGCGT
TCTCGTTAATATTGCGTAGC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLKETTSATGKPVLRWVDPHFNDSNYDSIVYNPITYYPIPK
PTTQVGQQVLDKLLAYTNTKVKSAIEQRKPLVTTAGPRSLIFREAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGKDLSNSSTPMAFETLKQVVDDMATDTSMFDTNKK

Sequences:

>Translated_222_residues
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLKETTSATGKPVLRWVDPHFNDSNYDSIVYNPITYYPIPK
PTTQVGQQVLDKLLAYTNTKVKSAIEQRKPLVTTAGPRSLIFREAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGKDLSNSSTPMAFETLKQVVDDMATDTSMFDTNKK
>Mature_222_residues
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLKETTSATGKPVLRWVDPHFNDSNYDSIVYNPITYYPIPK
PTTQVGQQVLDKLLAYTNTKVKSAIEQRKPLVTTAGPRSLIFREAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGKDLSNSSTPMAFETLKQVVDDMATDTSMFDTNKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787701, Length=222, Percent_Identity=84.2342342342342, Blast_Score=400, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021747 [H]

Pfam domain/function: PF11769 DUF3313 [H]

EC number: NA

Molecular weight: Translated: 24501; Mature: 24501

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLKETTSATGKPVLRWVDPHF
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
NDSNYDSIVYNPITYYPIPKPTTQVGQQVLDKLLAYTNTKVKSAIEQRKPLVTTAGPRSL
CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCHHHH
IFREAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTMDTHLYFEGELIDAATNKPVV
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCEECEEEEEECEEECCCCCCHHH
KVVRQGEGKDLSNSSTPMAFETLKQVVDDMATDTSMFDTNKK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLKETTSATGKPVLRWVDPHF
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
NDSNYDSIVYNPITYYPIPKPTTQVGQQVLDKLLAYTNTKVKSAIEQRKPLVTTAGPRSL
CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCHHHH
IFREAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTMDTHLYFEGELIDAATNKPVV
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCEECEEEEEECEEECCCCCCHHH
KVVRQGEGKDLSNSSTPMAFETLKQVVDDMATDTSMFDTNKK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]