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The map label for this gene is ydcN [H]

Identifier: 29141958

GI number: 29141958

Start: 1571166

End: 1571702

Strand: Reverse

Name: ydcN [H]

Synonym: t1514

Alternate gene names: 29141958

Gene position: 1571702-1571166 (Counterclockwise)

Preceding gene: 29141960

Following gene: 29141957

Centisome position: 32.8

GC content: 52.89

Gene sequence:

>537_bases
ATGGATAACCTGACACACTATCTGGCGACCACGTTAAGAACGTTACGCCATCAGCGAGGCTGGAGTTTATCACGTCTGGC
GGAGATCTCCGGCGTCTCAAAAGCCATGTTGGGGCAGATAGAGCGTAATGAATCCAGTCCGACAGTCGCAACGCTGTGGA
AAATTGCGACGGGCCTGAACGTTCCATTCTCAATGTTTATTTCGCCGCCGCAGGCCGAATTTCCTCCAACCTTCGATCCC
CAGCAGCAAGCGATGGTAATCACACCGCTGTTTCCGTGGGACCCTGAACTCTGTTTTGACTATTTTTCCCTATTGCTGGC
GCCTGGCGCGGTCAGCGAATCAACGCCGCATAAAGCCGGCGTTATCGAACATGTGGTGGTGATTCAGGGTCGGCTGGACA
TGTGTACTGGTGGGGTATGGCAAACCATAGACGCCGGTAAAGGTTTGCGTTTTGCCGGCGATACGGCGCATACCTATCGC
AACAGTAGTGACCAGACGGTTCATTTTCACTCGCTGATCCATTACCCACGTGATTAA

Upstream 100 bases:

>100_bases
CAGACGCATGATCGCCTCTTGTGCGTTATAACGGTCAGTCAATGTAGCATTGTGCGTTATAGCGTACAAGTGATACGCTA
TGGCCTTACAGGGGGGAAAA

Downstream 100 bases:

>100_bases
GCGGGAAAACTATTTCGTTAGTTTGCGCTTCTGACTACAATAGCCGCCATTTCGCTGCTATTGGATAAGAAAGACTGTAT
GCGCCAGCAACCTCACTATC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFISPPQAEFPPTFDP
QQQAMVITPLFPWDPELCFDYFSLLLAPGAVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR
NSSDQTVHFHSLIHYPRD

Sequences:

>Translated_178_residues
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFISPPQAEFPPTFDP
QQQAMVITPLFPWDPELCFDYFSLLLAPGAVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR
NSSDQTVHFHSLIHYPRD
>Mature_178_residues
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFISPPQAEFPPTFDP
QQQAMVITPLFPWDPELCFDYFSLLLAPGAVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR
NSSDQTVHFHSLIHYPRD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=177, Percent_Identity=73.4463276836158, Blast_Score=287, Evalue=3e-79,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 19807; Mature: 19807

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLN
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
VPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSESTPHKAG
CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
VIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYRNSSDQTVHFHSLIHYPRD
HHHHHEEECCCCCHHCCCHHEECCCCCCCEECCCCHHHHCCCCCCEEEHHHHHCCCCC
>Mature Secondary Structure
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLN
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
VPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSESTPHKAG
CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
VIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYRNSSDQTVHFHSLIHYPRD
HHHHHEEECCCCCHHCCCHHEECCCCCCCEECCCCHHHHCCCCCCEEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]