Click here to switch to the map view.

The map label for this gene is ygdR [H]

Identifier: 29141939

GI number: 29141939

Start: 1547848

End: 1548069

Strand: Reverse

Name: ygdR [H]

Synonym: t1495

Alternate gene names: 29141939

Gene position: 1548069-1547848 (Counterclockwise)

Preceding gene: 29141940

Following gene: 29141937

Centisome position: 32.31

GC content: 43.24

Gene sequence:

>222_bases
ATGAAAAAGTTATTTATATGCTCAGGTTTGGGCATGATGTTTTTTATGCTTGCGGGTTGTACAACCAACTATGTGATGAC
GACGAAGAATGGGCAAACGATCGTAACTCAGGGTAAGCCGCAGTTAGATAAAGAGACGGGAATGACCAGTTATACCGATC
AGGAAGGCAACCAGCGGGAAATTAACAGCAATGATGTGGCGCAGTTGATTAAGGCTGACTAA

Upstream 100 bases:

>100_bases
CACCGATACGCCTCGTTAAACCCCGCCGATAGCCTGATGATTCTGTGAGAATTACACTACCTTTTTGCAGTCGTTAACTC
ATTATATTCACGAGGAAAAT

Downstream 100 bases:

>100_bases
GCATTGGGCGCGATGCGGTGTTGGCGGCAACGCGCATTAAACCCGGCAGGCCTGAGGCTGCCGGGGAAGGGTAATGTTAT
GTCGCTGCTTCTTCTTTCAA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MKKLFICSGLGMMFFMLAGCTTNYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQREINSNDVAQLIKAD

Sequences:

>Translated_73_residues
MKKLFICSGLGMMFFMLAGCTTNYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQREINSNDVAQLIKAD
>Mature_73_residues
MKKLFICSGLGMMFFMLAGCTTNYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQREINSNDVAQLIKAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdI [H]

Homologues:

Organism=Escherichia coli, GI1789198, Length=72, Percent_Identity=48.6111111111111, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI87082162, Length=74, Percent_Identity=45.945945945946, Blast_Score=71, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010305 [H]

Pfam domain/function: PF06004 DUF903 [H]

EC number: NA

Molecular weight: Translated: 8088; Mature: 8088

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
8.2 %Met     (Translated Protein)
11.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
8.2 %Met     (Mature Protein)
11.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFICSGLGMMFFMLAGCTTNYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQRE
CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
INSNDVAQLIKAD
CCCHHHHHHHCCC
>Mature Secondary Structure
MKKLFICSGLGMMFFMLAGCTTNYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQRE
CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
INSNDVAQLIKAD
CCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]