Click here to switch to the map view.

The map label for this gene is rdgC [H]

Identifier: 161486791

GI number: 161486791

Start: 2545765

End: 2546676

Strand: Direct

Name: rdgC [H]

Synonym: t2472

Alternate gene names: 161486791

Gene position: 2545765-2546676 (Clockwise)

Preceding gene: 29142857

Following gene: 29142864

Centisome position: 53.13

GC content: 53.84

Gene sequence:

>912_bases
ATGCTGTGGTTCAAAAATTTAATGGTTTACCGTCTTAGCCGCGATATCACATTACGCGCCGAAGAGATGGAGAAACAGCT
CGCCTCAATGACGTTTACCCCATGCGGTAGCCAGGATATGGCCAAAATGGGCTGGGTTCCGCCGATGGGCTCTCACAGCG
ATGCGTTAACGCACACCGCCAATGGCCAAATTATTATTTGCGCGCGCAAAGAAGAGAAAATCCTGCCATCGCCAGTGATC
AAACAGGCACTGGAGGCGAAAATCCAGAAACTGGAAGCCGATCAGGGACGCAAGCTGAAGAAGACGGAAAAAGATTCCCT
GAAGGATGAAGTGTTGCATTCGTTGCTGCCGCGCGCGTTTAGCCGCTTCAGTCAGACAATGATGTGGATTGATACCGTTA
ACGGCCTGATTATGGTTGACTGCGCCAGCGCGAAAAAAGCGGAAGATACTTTGGCGCTACTGCGTAAAAGTCTTGGCTCG
CTGCCGGTCGTCCCGCTGGCGCTGGAAAATCCGATTGAGCTGACGCTCACCGAGTGGGTGCGCTCCGGTACGGTCGCTCA
GGGTTTCCAGTTGCTGGACGAAGCCGAATTGAAAGCGATGCTGGAAGATGGCGGCGTGATCCGCGCGAAAAAGCAGGATC
TGGTCAGCGACGAGATCGCCGTTCATATTGAAGCGGGTAAAGTGGTCACGAAGCTGGCGCTCGACTGGCAGCAGCGTATT
CAATTCGTCATGTGCGACGACGGCTCCATTAAGCGTCTGAAATTCTGCGATGAGCTGCGCGATCAGAACGAAGATATCGA
CCGGGAAGATTTTGCCCAACGTTTTGATGCGGACTTTATCCTGATGACCGGCGAGCTGGCGGCGCTGATTCAAAGCCTGG
TGGAAGGATTAGGCGGCGAAGCGCAGCGCTAA

Upstream 100 bases:

>100_bases
ATCAACAGGGTAGAATTCACCGTTCTGATTGGCAATGCAAGCCTGCCGACAATTCGTTACTATACCGACTGGATTTAACG
ACAAGGCCGTGGAAATTATC

Downstream 100 bases:

>100_bases
CCAGAGGGTCCCTCTCCGCCGGAGAGGGGACTCACCGTTACAAATAGCGGCACAGATACGAGGTGGGCTCAGCGACCTGT
AGATGAAACTCGCTGTGGCC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTANGQIIICARKEEKILPSPVI
KQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
LPVVPLALENPIELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRI
QFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGEAQR

Sequences:

>Translated_303_residues
MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTANGQIIICARKEEKILPSPVI
KQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
LPVVPLALENPIELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRI
QFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGEAQR
>Mature_303_residues
MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTANGQIIICARKEEKILPSPVI
KQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
LPVVPLALENPIELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRI
QFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGEAQR

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=303, Percent_Identity=93.0693069306931, Blast_Score=587, Evalue=1e-169,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 33977; Mature: 33977

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTA
CCHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHEEEC
NGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAF
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTLTEWV
HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
RSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRI
HCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCEEEEEECCHHHHHHHHHHHHCC
QFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGE
EEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC
AQR
CCC
>Mature Secondary Structure
MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTA
CCHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHEEEC
NGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAF
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
SRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTLTEWV
HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
RSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRI
HCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCEEEEEECCHHHHHHHHHHHHCC
QFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGE
EEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC
AQR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA