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The map label for this gene is ydcF [H]

Identifier: 28379761

GI number: 28379761

Start: 3044289

End: 3044984

Strand: Direct

Name: ydcF [H]

Synonym: lp_3432

Alternate gene names: 28379761

Gene position: 3044289-3044984 (Clockwise)

Preceding gene: 28379760

Following gene: 28379763

Centisome position: 92.02

GC content: 53.59

Gene sequence:

>696_bases
TTGGACGAACTGACCGCTTTCAATCAATGTCTGGCTTGGTTGACACACACCACCGCCTTGCCTGAGCACCTCGATGGCCT
GGTCCTTTGTGGCAACAGCCTCCCAGCAACAGCCACTGCAGCGGGCCAGTTAGCCCAAGACTATCAATTACCACTACTCA
TTATTGCGGGCGGCGTCGGCCACGCCACTAAGTATTTGCGGCAAAACTTAAACCTGCCAAAATCTCAAGCTAGTGAGGCT
GAGTTGATGGCGACGCTTGTTCGAAAGACTGGCTATCAAGGTAGTATCCGCCTCGACAAGACTTCTACCAATACCGGTAG
CAATGCCACGCATGCCCGCGCGTTAGCCCCCACCGATTGGCGCCACGTCCTACTCGTACAAGACCCGTTACTCGCGCGGC
GGACTACCCTAACGTTCTCAGCCAATTGGTCCAATGCCAACTTTATTCGCTATGCGCCGGCGACCTTGCAATTAAACCGG
CTACAACCAATGCAATTTACGCCAAACACAATAGTAGCTGGCTGGCAACCCGCTTATTTTACTGAACTCTTACTCGGTGA
ATTTCAACGCCTAGTGGATACCCCCACCGGTTATGGTCCCCGTGGTCAGGGCTTCATCGCCCATGTGGATATTCCCGAAG
AAGTTCTCGCTGCGGCCCGGTATTTACAGTCGCAATCACTACACCGCCAGCGTTAA

Upstream 100 bases:

>100_bases
AGCAACGATGTTTCAGCAAGCAGGCTTTCAAAATGTTCACTTCCAACGGTTCAACTTTGGGGCCGCAGCGGCTCACTTTG
GGACTAAGGAGGCCAAGTAA

Downstream 100 bases:

>100_bases
CGTTTATTTTTAAAATCTAGTAGTGCCACCAAAAAATCCCGTTTCACTGCAGCAGAACATTGCTACAGTAAAACGGGATT
TTTATAAGATGGGTTGATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MDELTAFNQCLAWLTHTTALPEHLDGLVLCGNSLPATATAAGQLAQDYQLPLLIIAGGVGHATKYLRQNLNLPKSQASEA
ELMATLVRKTGYQGSIRLDKTSTNTGSNATHARALAPTDWRHVLLVQDPLLARRTTLTFSANWSNANFIRYAPATLQLNR
LQPMQFTPNTIVAGWQPAYFTELLLGEFQRLVDTPTGYGPRGQGFIAHVDIPEEVLAAARYLQSQSLHRQR

Sequences:

>Translated_231_residues
MDELTAFNQCLAWLTHTTALPEHLDGLVLCGNSLPATATAAGQLAQDYQLPLLIIAGGVGHATKYLRQNLNLPKSQASEA
ELMATLVRKTGYQGSIRLDKTSTNTGSNATHARALAPTDWRHVLLVQDPLLARRTTLTFSANWSNANFIRYAPATLQLNR
LQPMQFTPNTIVAGWQPAYFTELLLGEFQRLVDTPTGYGPRGQGFIAHVDIPEEVLAAARYLQSQSLHRQR
>Mature_231_residues
MDELTAFNQCLAWLTHTTALPEHLDGLVLCGNSLPATATAAGQLAQDYQLPLLIIAGGVGHATKYLRQNLNLPKSQASEA
ELMATLVRKTGYQGSIRLDKTSTNTGSNATHARALAPTDWRHVLLVQDPLLARRTTLTFSANWSNANFIRYAPATLQLNR
LQPMQFTPNTIVAGWQPAYFTELLLGEFQRLVDTPTGYGPRGQGFIAHVDIPEEVLAAARYLQSQSLHRQR

Specific function: Binds S-adenosyl-L-methionine (AdoMet) [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO4629 [H]

Homologues:

Organism=Escherichia coli, GI1787683, Length=243, Percent_Identity=31.2757201646091, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 25418; Mature: 25418

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELTAFNQCLAWLTHTTALPEHLDGLVLCGNSLPATATAAGQLAQDYQLPLLIIAGGVG
CCCHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCH
HATKYLRQNLNLPKSQASEAELMATLVRKTGYQGSIRLDKTSTNTGSNATHARALAPTDW
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECCCCCC
RHVLLVQDPLLARRTTLTFSANWSNANFIRYAPATLQLNRLQPMQFTPNTIVAGWQPAYF
EEEEEECCCCHHHEEEEEEEECCCCCCEEEECCCEEEECCCCCCEECCCEEEECCCHHHH
TELLLGEFQRLVDTPTGYGPRGQGFIAHVDIPEEVLAAARYLQSQSLHRQR
HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDELTAFNQCLAWLTHTTALPEHLDGLVLCGNSLPATATAAGQLAQDYQLPLLIIAGGVG
CCCHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCH
HATKYLRQNLNLPKSQASEAELMATLVRKTGYQGSIRLDKTSTNTGSNATHARALAPTDW
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECCCCCC
RHVLLVQDPLLARRTTLTFSANWSNANFIRYAPATLQLNRLQPMQFTPNTIVAGWQPAYF
EEEEEECCCCHHHEEEEEEEECCCCCCEEEECCCEEEECCCCCCEECCCEEEECCCHHHH
TELLLGEFQRLVDTPTGYGPRGQGFIAHVDIPEEVLAAARYLQSQSLHRQR
HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10493123 [H]