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The map label for this gene is yjiR [C]

Identifier: 28379590

GI number: 28379590

Start: 2858550

End: 2859776

Strand: Direct

Name: yjiR [C]

Synonym: lp_3207

Alternate gene names: 28379590

Gene position: 2858550-2859776 (Clockwise)

Preceding gene: 28379588

Following gene: 28379591

Centisome position: 86.41

GC content: 47.03

Gene sequence:

>1227_bases
ATGAAAAAATTATTTGCAAATCGCGTGTTAAACAATGACACTTCCGACCTAGATGAGGTCTTCAAGAATAGTGCAAACCC
GGAAAACATTTCCTTCGCTGGTGGTTTTCCAGATCAGCACTTATTCCCTGACAACGACTTAAAGCAAGCCTATCGTGATG
CTATTGAACACGATGGTCAAGGCATTTTCCAATACTCATCAACTCAAGGGTTGCCGGCATTACGCCAAAAAATTGCAGAT
CGAATGGCGACTCATGCTGACGTTCAAGTTAGTGCCGACAATGTCATGATGACCCAAGGTGGTCAGCAAGCCATCGACCT
CGTGGCGAAGCTCATGTTGAACCATGGAGATGCCATGGTCGTCGAAGGCCCGACTTACATGGGGGCTTTAGCCGCCTTCG
ACACTTACGAACCGACTTACTACGAAATTCCAGTTGATGATAATGGGATGAATATTCGTCAACTTCGTAAAACCTTGAAA
GCTCATCCTGAGATCAAATTGATTTACACGATTCCTGACTTCCACAATCCAACGGGTACGACGATGAGTGCCAAACGTCG
TCAAGCACTCGTTGCCCTTGCCAATCAGTACGACGTCATTATTTTGGAAGACAGCCCGTACCGGGACCTCCGTTATAGTG
GTCAAAATATTCCGGCTATCAAACACTACGATACTGAAGGCCGCGTCATCTTTATCTCAAGTTTCTCAAAGATTCTCTCC
CCGGCCTTGCGAACAGGCTGGATTGTTGCTGACGACGCAATCATGCACGAATTGGTCGGACTGAAATCCGCAATCGATGT
TCAATCGCCAAATGTAACACTGGCTGCTATCAACAGCTACCTAGATCAACACGACATCGACGATCACGTTGCAACTATTA
GTACTTCATACCGGATTAAACGTGACGCGATGTTAGCCGCACTCGATCAATACTTCCCGCAAAATGTCCACTACACCCGT
CCTAATGGGGGCTTCTTCATCTGGGTAACCTTGCCAGAAGGAATTGATGCTAAAACCTTGCTCAATGACGTTGTTTTACC
GCAAGCACACGTTGCCTATGTGCCATCCGCTTGCCAATTCGCAAGTCGCAAGGTTAAAAACGGGTTCCGGTTGAATTTCA
CCAGTCTCGACGTCGAAACGATTACGCTGGGAATTAAACGCCTTGGCCACATCTTACAACCGGCACCAGTAATTGTTCCA
GCAGCATCGTTCGCACCCCAATTCTAA

Upstream 100 bases:

>100_bases
TTGAAAAAGTTGAGTTTTACTAATTACAAGCTTTATTTTATCATATTGATAATCAAAGAAAACAGTTTAAGTACAAAAAA
CTGAGTGGGGGAAAATTATT

Downstream 100 bases:

>100_bases
CTTGACCCACTCATCATGCGACTAACCGTAATAATTGCGATTAGTCGCATTTTTTGATTACATCTGTCAGCTGTAATGAG
TGGTCGTGCTCCTGAATATT

Product: aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MKKLFANRVLNNDTSDLDEVFKNSANPENISFAGGFPDQHLFPDNDLKQAYRDAIEHDGQGIFQYSSTQGLPALRQKIAD
RMATHADVQVSADNVMMTQGGQQAIDLVAKLMLNHGDAMVVEGPTYMGALAAFDTYEPTYYEIPVDDNGMNIRQLRKTLK
AHPEIKLIYTIPDFHNPTGTTMSAKRRQALVALANQYDVIILEDSPYRDLRYSGQNIPAIKHYDTEGRVIFISSFSKILS
PALRTGWIVADDAIMHELVGLKSAIDVQSPNVTLAAINSYLDQHDIDDHVATISTSYRIKRDAMLAALDQYFPQNVHYTR
PNGGFFIWVTLPEGIDAKTLLNDVVLPQAHVAYVPSACQFASRKVKNGFRLNFTSLDVETITLGIKRLGHILQPAPVIVP
AASFAPQF

Sequences:

>Translated_408_residues
MKKLFANRVLNNDTSDLDEVFKNSANPENISFAGGFPDQHLFPDNDLKQAYRDAIEHDGQGIFQYSSTQGLPALRQKIAD
RMATHADVQVSADNVMMTQGGQQAIDLVAKLMLNHGDAMVVEGPTYMGALAAFDTYEPTYYEIPVDDNGMNIRQLRKTLK
AHPEIKLIYTIPDFHNPTGTTMSAKRRQALVALANQYDVIILEDSPYRDLRYSGQNIPAIKHYDTEGRVIFISSFSKILS
PALRTGWIVADDAIMHELVGLKSAIDVQSPNVTLAAINSYLDQHDIDDHVATISTSYRIKRDAMLAALDQYFPQNVHYTR
PNGGFFIWVTLPEGIDAKTLLNDVVLPQAHVAYVPSACQFASRKVKNGFRLNFTSLDVETITLGIKRLGHILQPAPVIVP
AASFAPQF
>Mature_408_residues
MKKLFANRVLNNDTSDLDEVFKNSANPENISFAGGFPDQHLFPDNDLKQAYRDAIEHDGQGIFQYSSTQGLPALRQKIAD
RMATHADVQVSADNVMMTQGGQQAIDLVAKLMLNHGDAMVVEGPTYMGALAAFDTYEPTYYEIPVDDNGMNIRQLRKTLK
AHPEIKLIYTIPDFHNPTGTTMSAKRRQALVALANQYDVIILEDSPYRDLRYSGQNIPAIKHYDTEGRVIFISSFSKILS
PALRTGWIVADDAIMHELVGLKSAIDVQSPNVTLAAINSYLDQHDIDDHVATISTSYRIKRDAMLAALDQYFPQNVHYTR
PNGGFFIWVTLPEGIDAKTLLNDVVLPQAHVAYVPSACQFASRKVKNGFRLNFTSLDVETITLGIKRLGHILQPAPVIVP
AASFAPQF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=397, Percent_Identity=24.4332493702771, Blast_Score=135, Evalue=9e-32,
Organism=Homo sapiens, GI33469970, Length=397, Percent_Identity=24.4332493702771, Blast_Score=135, Evalue=9e-32,
Organism=Escherichia coli, GI1790797, Length=353, Percent_Identity=30.028328611898, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1787710, Length=381, Percent_Identity=28.0839895013123, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788722, Length=333, Percent_Identity=24.9249249249249, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321236, Length=393, Percent_Identity=27.9898218829517, Blast_Score=138, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6321929, Length=313, Percent_Identity=23.0031948881789, Blast_Score=77, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6321000, Length=249, Percent_Identity=23.6947791164659, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21356535, Length=352, Percent_Identity=26.7045454545455, Blast_Score=117, Evalue=2e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 45337; Mature: 45337

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFANRVLNNDTSDLDEVFKNSANPENISFAGGFPDQHLFPDNDLKQAYRDAIEHDGQ
CCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
GIFQYSSTQGLPALRQKIADRMATHADVQVSADNVMMTQGGQQAIDLVAKLMLNHGDAMV
EEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCHHHHHHHHHHHHCCCCEEE
VEGPTYMGALAAFDTYEPTYYEIPVDDNGMNIRQLRKTLKAHPEIKLIYTIPDFHNPTGT
EECCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCC
TMSAKRRQALVALANQYDVIILEDSPYRDLRYSGQNIPAIKHYDTEGRVIFISSFSKILS
CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCCCEEEEECCCCCEEEEECHHHHHH
PALRTGWIVADDAIMHELVGLKSAIDVQSPNVTLAAINSYLDQHDIDDHVATISTSYRIK
HHHHCCEEEECHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHEEEECCCEEH
RDAMLAALDQYFPQNVHYTRPNGGFFIWVTLPEGIDAKTLLNDVVLPQAHVAYVPSACQF
HHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHCCHHHHH
ASRKVKNGFRLNFTSLDVETITLGIKRLGHILQPAPVIVPAASFAPQF
HHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECHHCCCCC
>Mature Secondary Structure
MKKLFANRVLNNDTSDLDEVFKNSANPENISFAGGFPDQHLFPDNDLKQAYRDAIEHDGQ
CCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
GIFQYSSTQGLPALRQKIADRMATHADVQVSADNVMMTQGGQQAIDLVAKLMLNHGDAMV
EEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCHHHHHHHHHHHHCCCCEEE
VEGPTYMGALAAFDTYEPTYYEIPVDDNGMNIRQLRKTLKAHPEIKLIYTIPDFHNPTGT
EECCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCC
TMSAKRRQALVALANQYDVIILEDSPYRDLRYSGQNIPAIKHYDTEGRVIFISSFSKILS
CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCCCEEEEECCCCCEEEEECHHHHHH
PALRTGWIVADDAIMHELVGLKSAIDVQSPNVTLAAINSYLDQHDIDDHVATISTSYRIK
HHHHCCEEEECHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHEEEECCCEEH
RDAMLAALDQYFPQNVHYTRPNGGFFIWVTLPEGIDAKTLLNDVVLPQAHVAYVPSACQF
HHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHCCHHHHH
ASRKVKNGFRLNFTSLDVETITLGIKRLGHILQPAPVIVPAASFAPQF
HHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]