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The map label for this gene is yciB [H]

Identifier: 28379551

GI number: 28379551

Start: 2819313

End: 2819972

Strand: Direct

Name: yciB [H]

Synonym: lp_3155

Alternate gene names: 28379551

Gene position: 2819313-2819972 (Clockwise)

Preceding gene: 28379550

Following gene: 28379564

Centisome position: 85.22

GC content: 45.3

Gene sequence:

>660_bases
ATGAAACTAACAACAAAGTTTATTCTATATCTAACCTTATCTTTTTCCGGAATAGTGCTACTATTTGGGATTAGAAGTAT
GGTTAGAAATAGTTTTGCTTTCGAAGCAACTAGGGCTCAAGCTGCCAGTACAAGCCACTCTAATTCAAGCCATACTAAAT
CTAAAACGCGTAAAAGTAGTGTCAGCCATAAAACAGCCGCTGCAACGGCAACCCCGGTTGATTGGCACGGCCCTTCTGAA
TCCAACCATCCTTATCCGAATGTGCAAAATTATCCCAACTTGAGGATTGATGTCTCCGTTGCAAAACAGCGGGTCTACCT
GAAAGCTGGCAATAAGCTCCTGTACACAATGCTTGCCACTACCGGTAAACCCGGTGCAAATGCAACTCCCAAAGGCGATT
TCGTTATCCAACCTGAACGCGGCCTGCATTTTTACAATGCTAGCTTGAACGAAGGTGCCAATTACTGGGTCTCATTTAAG
GATCACGGCGTCTACCTCTTTCACTCGGTTCCAGTAGACGCATCCGATCACTATATTGCCAGCAAGGCAGCCTTACTCGG
CAAAAGGTCCGATTCACATGGTTGCGTCCGCTTGTCCATTTCGGATGCTAAGTGGATGTACGAGCATATCCCAGTAAACA
CACCTGTTCATATCCAGTAA

Upstream 100 bases:

>100_bases
AACGCCCAGATTACTGCTGACGGTTACACTTGGTTACAATACATTTCTGGCTCTGGCACCCTCCGCTATGCAGTAATGTA
AAATTAAGGAGTATGATTAC

Downstream 100 bases:

>100_bases
TAATACGAAGCCTGCCAAACGCGTAACGATTAGCTGAAAAGTTGATAGTTACACGTTTTACAGTAAAAAGCACAATGACT
AGAATCAGTAATCGTGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKLTTKFILYLTLSFSGIVLLFGIRSMVRNSFAFEATRAQAASTSHSNSSHTKSKTRKSSVSHKTAAATATPVDWHGPSE
SNHPYPNVQNYPNLRIDVSVAKQRVYLKAGNKLLYTMLATTGKPGANATPKGDFVIQPERGLHFYNASLNEGANYWVSFK
DHGVYLFHSVPVDASDHYIASKAALLGKRSDSHGCVRLSISDAKWMYEHIPVNTPVHIQ

Sequences:

>Translated_219_residues
MKLTTKFILYLTLSFSGIVLLFGIRSMVRNSFAFEATRAQAASTSHSNSSHTKSKTRKSSVSHKTAAATATPVDWHGPSE
SNHPYPNVQNYPNLRIDVSVAKQRVYLKAGNKLLYTMLATTGKPGANATPKGDFVIQPERGLHFYNASLNEGANYWVSFK
DHGVYLFHSVPVDASDHYIASKAALLGKRSDSHGCVRLSISDAKWMYEHIPVNTPVHIQ
>Mature_219_residues
MKLTTKFILYLTLSFSGIVLLFGIRSMVRNSFAFEATRAQAASTSHSNSSHTKSKTRKSSVSHKTAAATATPVDWHGPSE
SNHPYPNVQNYPNLRIDVSVAKQRVYLKAGNKLLYTMLATTGKPGANATPKGDFVIQPERGLHFYNASLNEGANYWVSFK
DHGVYLFHSVPVDASDHYIASKAALLGKRSDSHGCVRLSISDAKWMYEHIPVNTPVHIQ

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24179; Mature: 24179

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTTKFILYLTLSFSGIVLLFGIRSMVRNSFAFEATRAQAASTSHSNSSHTKSKTRKSS
CCCCCEEEEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VSHKTAAATATPVDWHGPSESNHPYPNVQNYPNLRIDVSVAKQRVYLKAGNKLLYTMLAT
CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCEEEEEEEEC
TGKPGANATPKGDFVIQPERGLHFYNASLNEGANYWVSFKDHGVYLFHSVPVDASDHYIA
CCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCHH
SKAALLGKRSDSHGCVRLSISDAKWMYEHIPVNTPVHIQ
HHHHHHCCCCCCCCEEEEEECCCCEEHHHCCCCCCEEEC
>Mature Secondary Structure
MKLTTKFILYLTLSFSGIVLLFGIRSMVRNSFAFEATRAQAASTSHSNSSHTKSKTRKSS
CCCCCEEEEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VSHKTAAATATPVDWHGPSESNHPYPNVQNYPNLRIDVSVAKQRVYLKAGNKLLYTMLAT
CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCEEEEEEEEC
TGKPGANATPKGDFVIQPERGLHFYNASLNEGANYWVSFKDHGVYLFHSVPVDASDHYIA
CCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCHH
SKAALLGKRSDSHGCVRLSISDAKWMYEHIPVNTPVHIQ
HHHHHHCCCCCCCCEEEEEECCCCEEHHHCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]