BacMap

Definition	Lactobacillus plantarum WCFS1, complete genome.
Accession	NC_004567
Length	3,308,274

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The map label for this gene is ydfG [C]

Identifier: 28379509

GI number: 28379509

Start: 2756951

End: 2757679

Strand: Direct

Name: ydfG [C]

Synonym: lp_3096

Alternate gene names: 28379509

Gene position: 2756951-2757679 (Clockwise)

Preceding gene: 28379507

Following gene: 28379511

Centisome position: 83.34

GC content: 48.97

Gene sequence:

>729_bases
ATGAAACCATTAGTCGTCATTACTGGAGCCAGTTCTGGCTTTGGTGCCGAGATTGCCAAGTTATTCGCCGCTGACAACTA
CCCACTGTTACTATTAGGGCGTCGCCAAGCAAAGTTAGCCGCCTTATCTGCGAACTTTGAAAATGCCATGATCGACACAG
TCGATGTGACCAACTATCACCAATTCGAAACTGCCGTTCGCAAGGCCGAAGCCAAGTATGGCAAGACCGACTTACTAGTT
AATAATGCGGGATTAATGTTACTAGGAAATGTTCAAAATCAGGACCCACAAGAGTGGCAAACCATGCTTAATACGAACGT
GATGGGTGTTTTAAACGGCACTCAAATTGTCCTAAATGACATGCGTGACCGGGAACATGGAACGATTCTCAATATGTCAT
CGTTAGCTGGCAAGAAAACGTTCGTCAATCACGCCGCTTACGTTGCATCCAAGTTTGGCGTCCACGGGCTATCCGAGACA
CTCCGTGAAGAAAATGCGCCGAAGAACGTGCGCGTCATGCTGGTAGCCCCCGGTGCAGCCGAAACTGAGCTGTTAACCCA
CGTTACTAGCAAGTCGGCACTGTCCGATTACGAAGCATGGAAAGCTTCCATGGGTGGCCTGACTTTGGACCCCAAGCACG
TAGCTGCCACGGTCAAGTTCATGTATGACATGCCGCAAAATGTCAATATCCGTGAAGTTGACATTGCTGCCACGGCCCAA
GATGCTTAA

Upstream 100 bases:

>100_bases
TAAAAGTGCGTACTTGTCGCGTTTAATCTAGCCAAGTATACTGTAAATCGTTGAAAATTCAAACGAAAACCATTATCCAA
AATTACGGAGGAATTACAAA

Downstream 100 bases:

>100_bases
TCTCAGCTCATTTGATTAAAAAAGCCACCTAACCGCACCGAGCTCTGCCGGTGCATGGCTAGGTGGCTTTTACAATTGCT
CATAAGTACCCAATCAACAC

Product: short-chain dehydrogenase/oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKPLVVITGASSGFGAEIAKLFAADNYPLLLLGRRQAKLAALSANFENAMIDTVDVTNYHQFETAVRKAEAKYGKTDLLV
NNAGLMLLGNVQNQDPQEWQTMLNTNVMGVLNGTQIVLNDMRDREHGTILNMSSLAGKKTFVNHAAYVASKFGVHGLSET
LREENAPKNVRVMLVAPGAAETELLTHVTSKSALSDYEAWKASMGGLTLDPKHVAATVKFMYDMPQNVNIREVDIAATAQ
DA

Sequences:

>Translated_242_residues
MKPLVVITGASSGFGAEIAKLFAADNYPLLLLGRRQAKLAALSANFENAMIDTVDVTNYHQFETAVRKAEAKYGKTDLLV
NNAGLMLLGNVQNQDPQEWQTMLNTNVMGVLNGTQIVLNDMRDREHGTILNMSSLAGKKTFVNHAAYVASKFGVHGLSET
LREENAPKNVRVMLVAPGAAETELLTHVTSKSALSDYEAWKASMGGLTLDPKHVAATVKFMYDMPQNVNIREVDIAATAQ
DA
>Mature_242_residues
MKPLVVITGASSGFGAEIAKLFAADNYPLLLLGRRQAKLAALSANFENAMIDTVDVTNYHQFETAVRKAEAKYGKTDLLV
NNAGLMLLGNVQNQDPQEWQTMLNTNVMGVLNGTQIVLNDMRDREHGTILNMSSLAGKKTFVNHAAYVASKFGVHGLSET
LREENAPKNVRVMLVAPGAAETELLTHVTSKSALSDYEAWKASMGGLTLDPKHVAATVKFMYDMPQNVNIREVDIAATAQ
DA

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=196, Percent_Identity=31.6326530612245, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI4758504, Length=242, Percent_Identity=30.1652892561983, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=25.6916996047431, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=30.8900523560209, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI40254992, Length=186, Percent_Identity=29.5698924731183, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7657478, Length=198, Percent_Identity=29.2929292929293, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI31542939, Length=235, Percent_Identity=28.0851063829787, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI223718074, Length=195, Percent_Identity=29.7435897435897, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI83715985, Length=242, Percent_Identity=28.099173553719, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4557649, Length=199, Percent_Identity=30.1507537688442, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=26.7015706806283, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI5031737, Length=184, Percent_Identity=29.8913043478261, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=29.8913043478261, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=30.635838150289, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI22507405, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19743808, Length=220, Percent_Identity=29.0909090909091, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI32483357, Length=186, Percent_Identity=26.8817204301075, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI142976729, Length=171, Percent_Identity=32.1637426900585, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40254986, Length=233, Percent_Identity=27.8969957081545, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI150247226, Length=206, Percent_Identity=30.5825242718447, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI59889578, Length=149, Percent_Identity=29.5302013422819, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI7705925, Length=181, Percent_Identity=27.0718232044199, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787820, Length=239, Percent_Identity=31.3807531380753, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787335, Length=197, Percent_Identity=30.9644670050761, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082100, Length=203, Percent_Identity=31.5270935960591, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787526, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790717, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=27.3684210526316, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=26.6304347826087, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=205, Percent_Identity=32.6829268292683, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=206, Percent_Identity=30.5825242718447, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17570069, Length=181, Percent_Identity=31.4917127071823, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=181, Percent_Identity=28.7292817679558, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=200, Percent_Identity=27, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=198, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=242, Percent_Identity=26.4462809917355, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=246, Percent_Identity=28.0487804878049, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=186, Percent_Identity=26.8817204301075, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=240, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=191, Percent_Identity=29.3193717277487, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=194, Percent_Identity=29.3814432989691, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=34.1836734693878, Blast_Score=99, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=187, Percent_Identity=31.0160427807487, Blast_Score=73, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=194, Percent_Identity=24.2268041237113, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=208, Percent_Identity=26.4423076923077, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=186, Percent_Identity=29.0322580645161, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI23397609, Length=181, Percent_Identity=34.8066298342541, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=33.8709677419355, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28571387, Length=251, Percent_Identity=27.8884462151394, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571526, Length=231, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24641388, Length=252, Percent_Identity=28.1746031746032, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281364494, Length=247, Percent_Identity=27.9352226720648, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21358495, Length=189, Percent_Identity=31.2169312169312, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643142, Length=183, Percent_Identity=30.0546448087432, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24644339, Length=231, Percent_Identity=29.4372294372294, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=27.7551020408163, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24641232, Length=245, Percent_Identity=28.9795918367347, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007234, Length=246, Percent_Identity=27.2357723577236, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281364892, Length=224, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355631, Length=175, Percent_Identity=29.1428571428571, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=29.6482412060301, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21355319, Length=227, Percent_Identity=26.431718061674, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640492, Length=190, Percent_Identity=27.8947368421053, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648693, Length=248, Percent_Identity=25.4032258064516, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355889, Length=248, Percent_Identity=25.4032258064516, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007238, Length=172, Percent_Identity=29.6511627906977, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=24.6808510638298, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24639444, Length=229, Percent_Identity=25.3275109170306, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24584752, Length=185, Percent_Identity=28.1081081081081, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=28.125, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649181, Length=196, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26265; Mature: 26265

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLVVITGASSGFGAEIAKLFAADNYPLLLLGRRQAKLAALSANFENAMIDTVDVTNYH
CCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCHH
QFETAVRKAEAKYGKTDLLVNNAGLMLLGNVQNQDPQEWQTMLNTNVMGVLNGTQIVLND
HHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCHHHHHHHHCCCEEEEECCCEEEEEC
MRDREHGTILNMSSLAGKKTFVNHAAYVASKFGVHGLSETLREENAPKNVRVMLVAPGAA
CCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEECCCC
ETELLTHVTSKSALSDYEAWKASMGGLTLDPKHVAATVKFMYDMPQNVNIREVDIAATAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHEECCCCCCCEEEEEEEECCC
DA
CC
>Mature Secondary Structure
MKPLVVITGASSGFGAEIAKLFAADNYPLLLLGRRQAKLAALSANFENAMIDTVDVTNYH
CCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCHH
QFETAVRKAEAKYGKTDLLVNNAGLMLLGNVQNQDPQEWQTMLNTNVMGVLNGTQIVLND
HHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCHHHHHHHHCCCEEEEECCCEEEEEC
MRDREHGTILNMSSLAGKKTFVNHAAYVASKFGVHGLSETLREENAPKNVRVMLVAPGAA
CCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEECCCC
ETELLTHVTSKSALSDYEAWKASMGGLTLDPKHVAATVKFMYDMPQNVNIREVDIAATAQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHEECCCCCCCEEEEEEEECCC
DA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA