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The map label for this gene is ytbD [H]

Identifier: 28379498

GI number: 28379498

Start: 2742416

End: 2743621

Strand: Direct

Name: ytbD [H]

Synonym: lp_3082

Alternate gene names: 28379498

Gene position: 2742416-2743621 (Clockwise)

Preceding gene: 28379496

Following gene: 28379499

Centisome position: 82.9

GC content: 48.76

Gene sequence:

>1206_bases
ATGACAAAACAGTTTAATCCCAGTTGGACACTTTTTGCACTCGCAATCAGTGCCTTCGCCATTGGGTCAACGGAATTTAT
TAGTGTTGGTTTAATGCCACTACTCGTTAGCAACTTTCACATCAACTTGGCGCAAGCTGGGCTGACCGTCTCGATCTACG
CCATTGGTATCATGATTGGCGCGCCCGTCATGACATTACTCACCGGTCGGCTTAACCGTCACCGCTTGATGATGTTAATT
ATGATTTTATTTATTATTGGTAACTTACTCGCAGCAAGTGCCCCAACCTTTGGTGTCTTACTTGCAGGCCGGGTCGTGGC
CGCTTTGGCTCACGGTATTTTTATGACCGTCGCCTCAGTAATTGCCGCTGACGTGGTCGCACCTGCCAAACGGGCCTCGG
CGATTGCCATCATGTTTACAGGACTGACTGTCGCAACGGTTACTGGTGTTCCGTTGGGAACGATGATTGGTCAATTAGGC
GGTTGGCGCTGGTCCTTTATCTTTATTAGCATGATTGGTGTCATTGGTTTGTTAGCTGATTACTGGTTAATTCCACGTAA
TCTGCCGTTACCCAGTAAAGCCACGGTCCGGGGGATTATCCGCGTACTCACTAATCCACAACTACTGTTCGCCTTACTCG
TCACGGCGCTGGGATACGGTGGTACCTTCGTAGTTTACACCTACCTATCACCACTACTAGAACAGCAGATGCATTGGTCA
GCGAGCGCTGTCGTTTTGATTCTAGTCGTTTACGGCTTAATGGTCGCCCTTGGTAATACACTGGGTGGTCGTTGGGCCAA
TGCACGGCCCTTAATTGCACTATTCAAGATGTTCAGTGGGTTACTCATCACCTTACTCATTCTAAGCGTCACCGGGTACA
GTCACTGGCTAGGGCTATTGACCGTCCTACTGATGGGAATCTTTGCCTTCATGAACGTCCCTGGGCTCCAACTCTATATT
GTTCAGTTAGCTGAACAGAATACACCACACGATATTACGATGGCCTCAGCGTTAAATATTTCCGCTTTTAACGTCGGTAT
CGCACTCGGCTCCGGTATTGGTGGTCAAGTCACGACCAACCTTGGCTTAGGCTGGACACCGATCTTTGGTGCCATCATGG
TTGCTGTTAGCTTAGTCCTATTGTTAGGTCTAATTTGGTTAGCGCGGCCCGCAAAAAGCACCGACCGGCATTGCGTTCAA
AATTAA

Upstream 100 bases:

>100_bases
TTTTTAGTGGGTATCCCACTTTAAAGTCGGTACTTGTCTAAAAGTCACTTGCTAGTATAATCATTATTTATCAACTTAGC
AATAGCAGGAGGCTTATCTT

Downstream 100 bases:

>100_bases
TAACTAAATGACCCGTAGTCGTCTTAAACGGTCATCGAAAACACTAAGCTTAGCGGCTTAACAATGACCGCCAATTCGGT
TGTCCTATCGCTAGGCTGAG

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTKQFNPSWTLFALAISAFAIGSTEFISVGLMPLLVSNFHINLAQAGLTVSIYAIGIMIGAPVMTLLTGRLNRHRLMMLI
MILFIIGNLLAASAPTFGVLLAGRVVAALAHGIFMTVASVIAADVVAPAKRASAIAIMFTGLTVATVTGVPLGTMIGQLG
GWRWSFIFISMIGVIGLLADYWLIPRNLPLPSKATVRGIIRVLTNPQLLFALLVTALGYGGTFVVYTYLSPLLEQQMHWS
ASAVVLILVVYGLMVALGNTLGGRWANARPLIALFKMFSGLLITLLILSVTGYSHWLGLLTVLLMGIFAFMNVPGLQLYI
VQLAEQNTPHDITMASALNISAFNVGIALGSGIGGQVTTNLGLGWTPIFGAIMVAVSLVLLLGLIWLARPAKSTDRHCVQ
N

Sequences:

>Translated_401_residues
MTKQFNPSWTLFALAISAFAIGSTEFISVGLMPLLVSNFHINLAQAGLTVSIYAIGIMIGAPVMTLLTGRLNRHRLMMLI
MILFIIGNLLAASAPTFGVLLAGRVVAALAHGIFMTVASVIAADVVAPAKRASAIAIMFTGLTVATVTGVPLGTMIGQLG
GWRWSFIFISMIGVIGLLADYWLIPRNLPLPSKATVRGIIRVLTNPQLLFALLVTALGYGGTFVVYTYLSPLLEQQMHWS
ASAVVLILVVYGLMVALGNTLGGRWANARPLIALFKMFSGLLITLLILSVTGYSHWLGLLTVLLMGIFAFMNVPGLQLYI
VQLAEQNTPHDITMASALNISAFNVGIALGSGIGGQVTTNLGLGWTPIFGAIMVAVSLVLLLGLIWLARPAKSTDRHCVQ
N
>Mature_400_residues
TKQFNPSWTLFALAISAFAIGSTEFISVGLMPLLVSNFHINLAQAGLTVSIYAIGIMIGAPVMTLLTGRLNRHRLMMLIM
ILFIIGNLLAASAPTFGVLLAGRVVAALAHGIFMTVASVIAADVVAPAKRASAIAIMFTGLTVATVTGVPLGTMIGQLGG
WRWSFIFISMIGVIGLLADYWLIPRNLPLPSKATVRGIIRVLTNPQLLFALLVTALGYGGTFVVYTYLSPLLEQQMHWSA
SAVVLILVVYGLMVALGNTLGGRWANARPLIALFKMFSGLLITLLILSVTGYSHWLGLLTVLLMGIFAFMNVPGLQLYIV
QLAEQNTPHDITMASALNISAFNVGIALGSGIGGQVTTNLGLGWTPIFGAIMVAVSLVLLLGLIWLARPAKSTDRHCVQN

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=396, Percent_Identity=36.8686868686869, Blast_Score=212, Evalue=4e-56,
Organism=Escherichia coli, GI1786595, Length=366, Percent_Identity=29.7814207650273, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1787808, Length=368, Percent_Identity=28.2608695652174, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI145693198, Length=364, Percent_Identity=24.7252747252747, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42670; Mature: 42539

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQFNPSWTLFALAISAFAIGSTEFISVGLMPLLVSNFHINLAQAGLTVSIYAIGIMIG
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
APVMTLLTGRLNRHRLMMLIMILFIIGNLLAASAPTFGVLLAGRVVAALAHGIFMTVASV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IAADVVAPAKRASAIAIMFTGLTVATVTGVPLGTMIGQLGGWRWSFIFISMIGVIGLLAD
HHHHHHHHHHHHCEEEEEECCHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
YWLIPRNLPLPSKATVRGIIRVLTNPQLLFALLVTALGYGGTFVVYTYLSPLLEQQMHWS
HHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
ASAVVLILVVYGLMVALGNTLGGRWANARPLIALFKMFSGLLITLLILSVTGYSHWLGLL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TVLLMGIFAFMNVPGLQLYIVQLAEQNTPHDITMASALNISAFNVGIALGSGIGGQVTTN
HHHHHHHHHHHCCCCHHHHHEEHHCCCCCCCEEHHHHCCEEHEEEHEEECCCCCCCEEEC
LGLGWTPIFGAIMVAVSLVLLLGLIWLARPAKSTDRHCVQN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
>Mature Secondary Structure 
TKQFNPSWTLFALAISAFAIGSTEFISVGLMPLLVSNFHINLAQAGLTVSIYAIGIMIG
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
APVMTLLTGRLNRHRLMMLIMILFIIGNLLAASAPTFGVLLAGRVVAALAHGIFMTVASV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IAADVVAPAKRASAIAIMFTGLTVATVTGVPLGTMIGQLGGWRWSFIFISMIGVIGLLAD
HHHHHHHHHHHHCEEEEEECCHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
YWLIPRNLPLPSKATVRGIIRVLTNPQLLFALLVTALGYGGTFVVYTYLSPLLEQQMHWS
HHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
ASAVVLILVVYGLMVALGNTLGGRWANARPLIALFKMFSGLLITLLILSVTGYSHWLGLL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TVLLMGIFAFMNVPGLQLYIVQLAEQNTPHDITMASALNISAFNVGIALGSGIGGQVTTN
HHHHHHHHHHHCCCCHHHHHEEHHCCCCCCCEEHHHHCCEEHEEEHEEECCCCCCCEEEC
LGLGWTPIFGAIMVAVSLVLLLGLIWLARPAKSTDRHCVQN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]