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The map label for this gene is yciB [H]

Identifier: 28379499

GI number: 28379499

Start: 2744152

End: 2744781

Strand: Direct

Name: yciB [H]

Synonym: lp_3084

Alternate gene names: 28379499

Gene position: 2744152-2744781 (Clockwise)

Preceding gene: 28379498

Following gene: 28379504

Centisome position: 82.95

GC content: 46.35

Gene sequence:

>630_bases
ATGCAACGCAAATCAACATTAATTTTATTAACTAGCATCACTTTAGTTATCGGCTTACTGGCGGTCGGCACTGTCAAAGT
TGTTGGTGATGCCCACAGACCTAGCCAATCAACGGTAACCACCAAAAAAGTCGTGTCAAAGACGAAAGCCAAAACCACGG
CTAAATCAACGGTCATGCGCACACCAATCAACTGGCGTCAATCATCCGAAACAGTCGCGTATCCCAATGTCAACCGCTAT
CCAGACTTATGGATTCACGTATCGTTGGCTAAACAACGGCTATACTTGATGAACCATCACCACGTTCTCTATACAATGTA
TGCATCCAGTGGCGTGCCAACTGCTGACCGCAAAACACCCCGTGGCACCTATCATGTGCAAGCCGAACGGGGAAAATATT
TTTATAGCGCTAGTGTTGATGAAGGTGCCTATTACTGGGTCTCATGGCTCAACCATGGTGAATATTTGTTCCACTCCACA
CCCGTAGATGCCCAAGGTCACTTTATCAAATCAGACGCTGCTGATCTTGGCAAGCGACCGTCTTCACACGGTTGCATTCA
TCTGAGCGTTGCAGATTCCAAGTGGGTCTATAACAACATCAAGTATGGCACTAAAGTCGTCATCGACTAA

Upstream 100 bases:

>100_bases
ACTTTTACTGAGAAGGTCCTGATTGAATGGTCAGTATTGACTATTACCACTAACTATCAAGTCAGAGCCAGACAGAACCA
ACCAACTATGGGGGCGCAAC

Downstream 100 bases:

>100_bases
CGAAACAACTACAAAACCACCAAAATAAATCATCCAGCAACCTATTTGTATTAAGACAATCAGGTCGCTGGATGATTTTT
ATTCTCATTGGCACGTTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MQRKSTLILLTSITLVIGLLAVGTVKVVGDAHRPSQSTVTTKKVVSKTKAKTTAKSTVMRTPINWRQSSETVAYPNVNRY
PDLWIHVSLAKQRLYLMNHHHVLYTMYASSGVPTADRKTPRGTYHVQAERGKYFYSASVDEGAYYWVSWLNHGEYLFHST
PVDAQGHFIKSDAADLGKRPSSHGCIHLSVADSKWVYNNIKYGTKVVID

Sequences:

>Translated_209_residues
MQRKSTLILLTSITLVIGLLAVGTVKVVGDAHRPSQSTVTTKKVVSKTKAKTTAKSTVMRTPINWRQSSETVAYPNVNRY
PDLWIHVSLAKQRLYLMNHHHVLYTMYASSGVPTADRKTPRGTYHVQAERGKYFYSASVDEGAYYWVSWLNHGEYLFHST
PVDAQGHFIKSDAADLGKRPSSHGCIHLSVADSKWVYNNIKYGTKVVID
>Mature_209_residues
MQRKSTLILLTSITLVIGLLAVGTVKVVGDAHRPSQSTVTTKKVVSKTKAKTTAKSTVMRTPINWRQSSETVAYPNVNRY
PDLWIHVSLAKQRLYLMNHHHVLYTMYASSGVPTADRKTPRGTYHVQAERGKYFYSASVDEGAYYWVSWLNHGEYLFHST
PVDAQGHFIKSDAADLGKRPSSHGCIHLSVADSKWVYNNIKYGTKVVID

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 23468; Mature: 23468

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKSTLILLTSITLVIGLLAVGTVKVVGDAHRPSQSTVTTKKVVSKTKAKTTAKSTVMR
CCCCCEEEEHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHEEE
TPINWRQSSETVAYPNVNRYPDLWIHVSLAKQRLYLMNHHHVLYTMYASSGVPTADRKTP
CCCCCCCCCCEEECCCCCCCCCEEEEEEEHHCEEEEECCCEEEEEEEECCCCCCCCCCCC
RGTYHVQAERGKYFYSASVDEGAYYWVSWLNHGEYLFHSTPVDAQGHFIKSDAADLGKRP
CCEEEEEECCCCEEEEECCCCCEEEEEEEECCCEEEEECCCCCCCCCEEECCHHHHCCCC
SSHGCIHLSVADSKWVYNNIKYGTKVVID
CCCCEEEEEECCCCEEECCCCCCEEEEEC
>Mature Secondary Structure
MQRKSTLILLTSITLVIGLLAVGTVKVVGDAHRPSQSTVTTKKVVSKTKAKTTAKSTVMR
CCCCCEEEEHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHEEE
TPINWRQSSETVAYPNVNRYPDLWIHVSLAKQRLYLMNHHHVLYTMYASSGVPTADRKTP
CCCCCCCCCCEEECCCCCCCCCEEEEEEEHHCEEEEECCCEEEEEEEECCCCCCCCCCCC
RGTYHVQAERGKYFYSASVDEGAYYWVSWLNHGEYLFHSTPVDAQGHFIKSDAADLGKRP
CCEEEEEECCCCEEEEECCCCCEEEEEEEECCCEEEEECCCCCCCCCEEECCHHHHCCCC
SSHGCIHLSVADSKWVYNNIKYGTKVVID
CCCCEEEEEECCCCEEECCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]